miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30520 3' -55.3 NC_006548.1 + 19288 0.66 0.585557
Target:  5'- gGCuGCCaagGCGUGCCGU-CAGGCg-- -3'
miRNA:   3'- -CGcCGGga-CGUACGGUAuGUCUGacu -5'
30520 3' -55.3 NC_006548.1 + 33339 0.66 0.57313
Target:  5'- --cGCCCUGCGUGgCcgGCAGAaagcgauCUGGa -3'
miRNA:   3'- cgcCGGGACGUACgGuaUGUCU-------GACU- -5'
30520 3' -55.3 NC_006548.1 + 2789 0.66 0.563009
Target:  5'- aGCGugcuuGCCCUGCGccGCC-UGCAGAUcGAu -3'
miRNA:   3'- -CGC-----CGGGACGUa-CGGuAUGUCUGaCU- -5'
30520 3' -55.3 NC_006548.1 + 27029 0.67 0.540699
Target:  5'- aCGGCCC-GCAUcaggGCCAUGguGGCg-- -3'
miRNA:   3'- cGCCGGGaCGUA----CGGUAUguCUGacu -5'
30520 3' -55.3 NC_006548.1 + 32437 0.68 0.475827
Target:  5'- cGCGGCgCUGCAggaGCgCAUcUGGACUGu -3'
miRNA:   3'- -CGCCGgGACGUa--CG-GUAuGUCUGACu -5'
30520 3' -55.3 NC_006548.1 + 7414 0.68 0.475827
Target:  5'- gGCcGCCCUGgAUGCCcaguucGCGGACgGAg -3'
miRNA:   3'- -CGcCGGGACgUACGGua----UGUCUGaCU- -5'
30520 3' -55.3 NC_006548.1 + 25928 0.68 0.465384
Target:  5'- aCGGCCCgcGCggGCCA-GCAGGCggUGAc -3'
miRNA:   3'- cGCCGGGa-CGuaCGGUaUGUCUG--ACU- -5'
30520 3' -55.3 NC_006548.1 + 12335 0.69 0.424861
Target:  5'- -aGGCCCUGUgcGCCG-ACGGGCg-- -3'
miRNA:   3'- cgCCGGGACGuaCGGUaUGUCUGacu -5'
30520 3' -55.3 NC_006548.1 + 32464 0.69 0.424861
Target:  5'- gGCGGCgaCgGC-UGCCGgcCAGGCUGAu -3'
miRNA:   3'- -CGCCGg-GaCGuACGGUauGUCUGACU- -5'
30520 3' -55.3 NC_006548.1 + 15420 0.69 0.415062
Target:  5'- -gGGCauCCUGCAgggUGaCCGUguGCAGGCUGAu -3'
miRNA:   3'- cgCCG--GGACGU---AC-GGUA--UGUCUGACU- -5'
30520 3' -55.3 NC_006548.1 + 8314 0.7 0.368221
Target:  5'- uGCGGUUCUGCAUGCg--GCuGACgUGAu -3'
miRNA:   3'- -CGCCGGGACGUACGguaUGuCUG-ACU- -5'
30520 3' -55.3 NC_006548.1 + 17044 0.7 0.356651
Target:  5'- cCGGCuuccagcagcuccgCCUGCAUGCCG-GCGGGCaUGAu -3'
miRNA:   3'- cGCCG--------------GGACGUACGGUaUGUCUG-ACU- -5'
30520 3' -55.3 NC_006548.1 + 21942 0.71 0.308986
Target:  5'- uGuuGCCCgcgGCGUaGCUAUugGGGCUGAa -3'
miRNA:   3'- -CgcCGGGa--CGUA-CGGUAugUCUGACU- -5'
30520 3' -55.3 NC_006548.1 + 28038 0.74 0.189026
Target:  5'- cGCGGCCCUGCAggagGCCuAUgguccagccucacaGCAGGCg-- -3'
miRNA:   3'- -CGCCGGGACGUa---CGG-UA--------------UGUCUGacu -5'
30520 3' -55.3 NC_006548.1 + 16930 1.11 0.000415
Target:  5'- gGCGGCCCUGCAUGCCAUACAGACUGAu -3'
miRNA:   3'- -CGCCGGGACGUACGGUAUGUCUGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.