miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30520 5' -59.6 NC_006548.1 + 16966 1.05 0.00043
Target:  5'- -cUCAUGCCCGCCGGCAUGCAGGCGGa -3'
miRNA:   3'- guAGUACGGGCGGCCGUACGUCCGCC- -5'
30520 5' -59.6 NC_006548.1 + 23798 0.77 0.069671
Target:  5'- --cCAaGCCCGCCGGcCAUGCcGGUGGc -3'
miRNA:   3'- guaGUaCGGGCGGCC-GUACGuCCGCC- -5'
30520 5' -59.6 NC_006548.1 + 25936 0.73 0.130296
Target:  5'- uCGUCGUaacgGCCCGCgCGGgcCA-GCAGGCGGu -3'
miRNA:   3'- -GUAGUA----CGGGCG-GCC--GUaCGUCCGCC- -5'
30520 5' -59.6 NC_006548.1 + 19954 0.72 0.149698
Target:  5'- --aCGUGCCgGCCGGCGgggaggauugGCAgaguGGCGGu -3'
miRNA:   3'- guaGUACGGgCGGCCGUa---------CGU----CCGCC- -5'
30520 5' -59.6 NC_006548.1 + 8001 0.72 0.149698
Target:  5'- -----aGCgCGCCGGaugAUGCAGGCGGc -3'
miRNA:   3'- guaguaCGgGCGGCCg--UACGUCCGCC- -5'
30520 5' -59.6 NC_006548.1 + 29889 0.72 0.153881
Target:  5'- gGUCAUGCCCgGCUGGguUGC-GGCc- -3'
miRNA:   3'- gUAGUACGGG-CGGCCguACGuCCGcc -5'
30520 5' -59.6 NC_006548.1 + 27020 0.71 0.162567
Target:  5'- gAUCAgcagacgGCCCGCaucagGGcCAUGguGGCGGc -3'
miRNA:   3'- gUAGUa------CGGGCGg----CC-GUACguCCGCC- -5'
30520 5' -59.6 NC_006548.1 + 17032 0.71 0.181271
Target:  5'- -----aGCuCCGCCuGCAUGCcGGCGGg -3'
miRNA:   3'- guaguaCG-GGCGGcCGUACGuCCGCC- -5'
30520 5' -59.6 NC_006548.1 + 18517 0.71 0.186236
Target:  5'- cCGUCGUGgCCGCCGGgucCAUGUcGGCa- -3'
miRNA:   3'- -GUAGUACgGGCGGCC---GUACGuCCGcc -5'
30520 5' -59.6 NC_006548.1 + 24518 0.7 0.201856
Target:  5'- gGUCuUGCCgCGCugcaagCGGCcauauUGCAGGCGGu -3'
miRNA:   3'- gUAGuACGG-GCG------GCCGu----ACGUCCGCC- -5'
30520 5' -59.6 NC_006548.1 + 4137 0.7 0.218601
Target:  5'- uCGUCA-GCCUGCuCGGCGucgaUGUGGGCuGGa -3'
miRNA:   3'- -GUAGUaCGGGCG-GCCGU----ACGUCCG-CC- -5'
30520 5' -59.6 NC_006548.1 + 23866 0.7 0.218601
Target:  5'- gGUCGcGCCa-CCGGCAUgGCcGGCGGg -3'
miRNA:   3'- gUAGUaCGGgcGGCCGUA-CGuCCGCC- -5'
30520 5' -59.6 NC_006548.1 + 20866 0.68 0.283113
Target:  5'- gAUCAccggaGCCUucugGCgCGGCA-GCAGGCGGc -3'
miRNA:   3'- gUAGUa----CGGG----CG-GCCGUaCGUCCGCC- -5'
30520 5' -59.6 NC_006548.1 + 22733 0.68 0.290334
Target:  5'- -cUCGUGCCgGCCGGCgAUGaaguGGCc- -3'
miRNA:   3'- guAGUACGGgCGGCCG-UACgu--CCGcc -5'
30520 5' -59.6 NC_006548.1 + 2327 0.67 0.305205
Target:  5'- -uUCcUGUUCGUCGGC-UGCGcGGCGGc -3'
miRNA:   3'- guAGuACGGGCGGCCGuACGU-CCGCC- -5'
30520 5' -59.6 NC_006548.1 + 17762 0.67 0.312858
Target:  5'- -----aGUCCGCC-GUAUGCGGcGCGGg -3'
miRNA:   3'- guaguaCGGGCGGcCGUACGUC-CGCC- -5'
30520 5' -59.6 NC_006548.1 + 25862 0.67 0.328596
Target:  5'- uGUCAccGCCUGCUGGCccgcGCGGGCc- -3'
miRNA:   3'- gUAGUa-CGGGCGGCCGua--CGUCCGcc -5'
30520 5' -59.6 NC_006548.1 + 15489 0.67 0.328596
Target:  5'- uCAUCAUGCCCuggaucucaucGUCGGCcgGCAG-Ca- -3'
miRNA:   3'- -GUAGUACGGG-----------CGGCCGuaCGUCcGcc -5'
30520 5' -59.6 NC_006548.1 + 36704 0.67 0.336682
Target:  5'- gAUCA-GCgCGCCGGCcucAUGCGGcGCuGGc -3'
miRNA:   3'- gUAGUaCGgGCGGCCG---UACGUC-CG-CC- -5'
30520 5' -59.6 NC_006548.1 + 21739 0.67 0.344912
Target:  5'- --cCAcgGCCuggacgCGCCGGUgccGCAGGCGGa -3'
miRNA:   3'- guaGUa-CGG------GCGGCCGua-CGUCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.