miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30521 5' -58.7 NC_006548.1 + 5464 0.66 0.472604
Target:  5'- gCGAUCGcCGCCGggcucAGGUCGaccGCUCGaGCc -3'
miRNA:   3'- -GCUGGUaGCGGU-----UCCAGCc--CGAGC-CG- -5'
30521 5' -58.7 NC_006548.1 + 28895 0.66 0.472604
Target:  5'- cCGGCCAaacCGUCGAGG-CGG-C-CGGCg -3'
miRNA:   3'- -GCUGGUa--GCGGUUCCaGCCcGaGCCG- -5'
30521 5' -58.7 NC_006548.1 + 8208 0.66 0.472603
Target:  5'- gGAgCAcagUGCCGAGGUCauGGCgcaguUCGGCg -3'
miRNA:   3'- gCUgGUa--GCGGUUCCAGc-CCG-----AGCCG- -5'
30521 5' -58.7 NC_006548.1 + 16808 0.66 0.472603
Target:  5'- gGGCuCAUCGUCGuuGUCGGcGC-CGGUc -3'
miRNA:   3'- gCUG-GUAGCGGUucCAGCC-CGaGCCG- -5'
30521 5' -58.7 NC_006548.1 + 23878 0.66 0.462618
Target:  5'- -uGCCAUCuGCC-GGGUCGcgccaccggcauGGC-CGGCg -3'
miRNA:   3'- gcUGGUAG-CGGuUCCAGC------------CCGaGCCG- -5'
30521 5' -58.7 NC_006548.1 + 3692 0.66 0.442988
Target:  5'- cCGACCAUgacgcugagCGCCGAGG-CGGuGaacUGGCg -3'
miRNA:   3'- -GCUGGUA---------GCGGUUCCaGCC-Cga-GCCG- -5'
30521 5' -58.7 NC_006548.1 + 24309 0.66 0.423836
Target:  5'- --uCCAggGCC-GGGUCuGGGC-CGGCg -3'
miRNA:   3'- gcuGGUagCGGuUCCAG-CCCGaGCCG- -5'
30521 5' -58.7 NC_006548.1 + 23542 0.66 0.423836
Target:  5'- uGACCc-CGCCAGgcGGUgGGGUUCcGCa -3'
miRNA:   3'- gCUGGuaGCGGUU--CCAgCCCGAGcCG- -5'
30521 5' -58.7 NC_006548.1 + 18765 0.67 0.387065
Target:  5'- gGAUCugCGgCAGGGUCGcuaGCUCGGCc -3'
miRNA:   3'- gCUGGuaGCgGUUCCAGCc--CGAGCCG- -5'
30521 5' -58.7 NC_006548.1 + 16320 0.68 0.352458
Target:  5'- gCGGCCGUCGCCAcuGGU--GGCgaucuccCGGCc -3'
miRNA:   3'- -GCUGGUAGCGGUu-CCAgcCCGa------GCCG- -5'
30521 5' -58.7 NC_006548.1 + 24445 0.68 0.344156
Target:  5'- uGGCCAUCuG-CAGGGUCaaGGC-CGGCa -3'
miRNA:   3'- gCUGGUAG-CgGUUCCAGc-CCGaGCCG- -5'
30521 5' -58.7 NC_006548.1 + 32218 0.68 0.344156
Target:  5'- -uGCCA--GCCAAGGUCGaGGCgcuGGCc -3'
miRNA:   3'- gcUGGUagCGGUUCCAGC-CCGag-CCG- -5'
30521 5' -58.7 NC_006548.1 + 17612 0.68 0.335995
Target:  5'- aGGCCAUgGCCGAG---GGGCUggaGGCa -3'
miRNA:   3'- gCUGGUAgCGGUUCcagCCCGAg--CCG- -5'
30521 5' -58.7 NC_006548.1 + 2974 0.68 0.3201
Target:  5'- uCGACgGUCGCUAcaAGGucauUCGGGCcaUGGCc -3'
miRNA:   3'- -GCUGgUAGCGGU--UCC----AGCCCGa-GCCG- -5'
30521 5' -58.7 NC_006548.1 + 36805 0.68 0.3201
Target:  5'- gCGAgCGUCGCCGAGcuggUGcGGCUCaGCa -3'
miRNA:   3'- -GCUgGUAGCGGUUCca--GC-CCGAGcCG- -5'
30521 5' -58.7 NC_006548.1 + 14340 0.7 0.275832
Target:  5'- gCGAUCAgcUCGuCCAGGGUCauccGGCcaUCGGCc -3'
miRNA:   3'- -GCUGGU--AGC-GGUUCCAGc---CCG--AGCCG- -5'
30521 5' -58.7 NC_006548.1 + 2161 0.7 0.262203
Target:  5'- aGGCCGUguaCGCCAAGGUCGaccaGUUCgcgGGCg -3'
miRNA:   3'- gCUGGUA---GCGGUUCCAGCc---CGAG---CCG- -5'
30521 5' -58.7 NC_006548.1 + 23497 0.7 0.255597
Target:  5'- -aGCuCAUCGCCGAGGgcaaguucagccUCGGGC-CGGa -3'
miRNA:   3'- gcUG-GUAGCGGUUCC------------AGCCCGaGCCg -5'
30521 5' -58.7 NC_006548.1 + 25061 0.7 0.255597
Target:  5'- gCGACCGaaGCCAccuAGGUUGGcgUCGGCg -3'
miRNA:   3'- -GCUGGUagCGGU---UCCAGCCcgAGCCG- -5'
30521 5' -58.7 NC_006548.1 + 3124 0.7 0.254944
Target:  5'- aGAUCGUUGCCAAGGggaaGGCUCugaacaaGGCg -3'
miRNA:   3'- gCUGGUAGCGGUUCCagc-CCGAG-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.