Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30521 | 5' | -58.7 | NC_006548.1 | + | 23542 | 0.66 | 0.423836 |
Target: 5'- uGACCc-CGCCAGgcGGUgGGGUUCcGCa -3' miRNA: 3'- gCUGGuaGCGGUU--CCAgCCCGAGcCG- -5' |
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30521 | 5' | -58.7 | NC_006548.1 | + | 3692 | 0.66 | 0.442988 |
Target: 5'- cCGACCAUgacgcugagCGCCGAGG-CGGuGaacUGGCg -3' miRNA: 3'- -GCUGGUA---------GCGGUUCCaGCC-Cga-GCCG- -5' |
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30521 | 5' | -58.7 | NC_006548.1 | + | 23878 | 0.66 | 0.462618 |
Target: 5'- -uGCCAUCuGCC-GGGUCGcgccaccggcauGGC-CGGCg -3' miRNA: 3'- gcUGGUAG-CGGuUCCAGC------------CCGaGCCG- -5' |
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30521 | 5' | -58.7 | NC_006548.1 | + | 16808 | 0.66 | 0.472603 |
Target: 5'- gGGCuCAUCGUCGuuGUCGGcGC-CGGUc -3' miRNA: 3'- gCUG-GUAGCGGUucCAGCC-CGaGCCG- -5' |
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30521 | 5' | -58.7 | NC_006548.1 | + | 8208 | 0.66 | 0.472603 |
Target: 5'- gGAgCAcagUGCCGAGGUCauGGCgcaguUCGGCg -3' miRNA: 3'- gCUgGUa--GCGGUUCCAGc-CCG-----AGCCG- -5' |
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30521 | 5' | -58.7 | NC_006548.1 | + | 28895 | 0.66 | 0.472604 |
Target: 5'- cCGGCCAaacCGUCGAGG-CGG-C-CGGCg -3' miRNA: 3'- -GCUGGUa--GCGGUUCCaGCCcGaGCCG- -5' |
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30521 | 5' | -58.7 | NC_006548.1 | + | 5464 | 0.66 | 0.472604 |
Target: 5'- gCGAUCGcCGCCGggcucAGGUCGaccGCUCGaGCc -3' miRNA: 3'- -GCUGGUaGCGGU-----UCCAGCc--CGAGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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