miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30522 3' -45.9 NC_006548.1 + 8738 0.66 0.993266
Target:  5'- cGGUCUGcaacugcugcacAUCcuuggGCGAcGUCGUgCGACCa -3'
miRNA:   3'- cCUAGAU------------UAGa----CGCU-CAGCAaGUUGG- -5'
30522 3' -45.9 NC_006548.1 + 2877 0.66 0.992101
Target:  5'- aGGcgCUcGUCgaagGCGAuGUUG-UCGGCCa -3'
miRNA:   3'- -CCuaGAuUAGa---CGCU-CAGCaAGUUGG- -5'
30522 3' -45.9 NC_006548.1 + 18772 0.67 0.983703
Target:  5'- uGGG-CgagGAUCUGCGgcagGGUCGcuagcUCGGCCa -3'
miRNA:   3'- -CCUaGa--UUAGACGC----UCAGCa----AGUUGG- -5'
30522 3' -45.9 NC_006548.1 + 34150 0.68 0.973114
Target:  5'- cGGcAUUUGAUCUGCacccggcuGUCGgcCGGCCa -3'
miRNA:   3'- -CC-UAGAUUAGACGcu------CAGCaaGUUGG- -5'
30522 3' -45.9 NC_006548.1 + 7273 0.68 0.966263
Target:  5'- --cUCUGuagCUGCcGGUCGaggUCAACCa -3'
miRNA:   3'- ccuAGAUua-GACGcUCAGCa--AGUUGG- -5'
30522 3' -45.9 NC_006548.1 + 7068 0.69 0.95996
Target:  5'- aGGAUCUucgcgccagcggcuuGAUCcgUGCgGAGUCugUCGACCg -3'
miRNA:   3'- -CCUAGA---------------UUAG--ACG-CUCAGcaAGUUGG- -5'
30522 3' -45.9 NC_006548.1 + 12029 0.69 0.953815
Target:  5'- aGGAUC--GUCUGCGGaauccccaUCGUUaCAGCCc -3'
miRNA:   3'- -CCUAGauUAGACGCUc-------AGCAA-GUUGG- -5'
30522 3' -45.9 NC_006548.1 + 12647 0.69 0.943981
Target:  5'- cGGAUCU-AUCUGC-AGUgGggCGACg -3'
miRNA:   3'- -CCUAGAuUAGACGcUCAgCaaGUUGg -5'
30522 3' -45.9 NC_006548.1 + 15050 0.69 0.938588
Target:  5'- aGGAUCUGg---GCGAGaUCGUcaUCGACg -3'
miRNA:   3'- -CCUAGAUuagaCGCUC-AGCA--AGUUGg -5'
30522 3' -45.9 NC_006548.1 + 2060 0.7 0.932872
Target:  5'- uGGAUCgcGUCgGCGAuGUUGUcgUCGACg -3'
miRNA:   3'- -CCUAGauUAGaCGCU-CAGCA--AGUUGg -5'
30522 3' -45.9 NC_006548.1 + 25186 0.74 0.756479
Target:  5'- aGGggCUGAagCUGCGAGccaCGaUUCAGCCg -3'
miRNA:   3'- -CCuaGAUUa-GACGCUCa--GC-AAGUUGG- -5'
30522 3' -45.9 NC_006548.1 + 30283 0.76 0.664937
Target:  5'- aGGUCUGGguucgcggugaggaaCUGgaCGAGUCGUUCGACCa -3'
miRNA:   3'- cCUAGAUUa--------------GAC--GCUCAGCAAGUUGG- -5'
30522 3' -45.9 NC_006548.1 + 17168 1.17 0.002303
Target:  5'- cGGAUCUAAUCUGCGAGUCGUUCAACCu -3'
miRNA:   3'- -CCUAGAUUAGACGCUCAGCAAGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.