miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30523 3' -54.5 NC_006548.1 + 12987 0.66 0.653689
Target:  5'- cCGCGCUCAgcgCGAGCcagaacgugcuGGUgcGCAGg -3'
miRNA:   3'- cGUGCGAGUa--GCUCGu----------CCGuuCGUCg -5'
30523 3' -54.5 NC_006548.1 + 6516 0.66 0.653689
Target:  5'- uGCACGCgcca-GGGCGGcGCGGGUuacgGGCu -3'
miRNA:   3'- -CGUGCGaguagCUCGUC-CGUUCG----UCG- -5'
30523 3' -54.5 NC_006548.1 + 26375 0.66 0.653689
Target:  5'- aCGCGCUCugcu-GCAGGUAGuaaaagcgcGCGGCg -3'
miRNA:   3'- cGUGCGAGuagcuCGUCCGUU---------CGUCG- -5'
30523 3' -54.5 NC_006548.1 + 27198 0.66 0.652545
Target:  5'- aGCGUGCUCgcGUCcAGCAGGCGgcgaccgAGCAacGCg -3'
miRNA:   3'- -CGUGCGAG--UAGcUCGUCCGU-------UCGU--CG- -5'
30523 3' -54.5 NC_006548.1 + 23072 0.66 0.642241
Target:  5'- cGUugGgUgcaAUCGAGCGGG--AGCGGCc -3'
miRNA:   3'- -CGugCgAg--UAGCUCGUCCguUCGUCG- -5'
30523 3' -54.5 NC_006548.1 + 29390 0.66 0.642241
Target:  5'- gGC-CGCggUAUCGuuccuGCAGGCGGuCAGCc -3'
miRNA:   3'- -CGuGCGa-GUAGCu----CGUCCGUUcGUCG- -5'
30523 3' -54.5 NC_006548.1 + 27932 0.66 0.642241
Target:  5'- gGCGCGUUC-UCGcugccgccaaGGCccuGGGCAccaacacaaAGCAGCu -3'
miRNA:   3'- -CGUGCGAGuAGC----------UCG---UCCGU---------UCGUCG- -5'
30523 3' -54.5 NC_006548.1 + 32500 0.66 0.630783
Target:  5'- cGCGCGCaUCGUCuggcaacuGCAGGaCGAaCAGCc -3'
miRNA:   3'- -CGUGCG-AGUAGcu------CGUCC-GUUcGUCG- -5'
30523 3' -54.5 NC_006548.1 + 17628 0.66 0.630783
Target:  5'- aGCuggggaGCUagAUCGAGCAGGCGcucgcGCAGa -3'
miRNA:   3'- -CGug----CGAg-UAGCUCGUCCGUu----CGUCg -5'
30523 3' -54.5 NC_006548.1 + 14724 0.66 0.630783
Target:  5'- --cUGCUCAgCGAGCAGcGCcuGGCGcGCg -3'
miRNA:   3'- cguGCGAGUaGCUCGUC-CGu-UCGU-CG- -5'
30523 3' -54.5 NC_006548.1 + 2878 0.66 0.619326
Target:  5'- -gGCGCUCGUCGA--AGGCGAuguuGuCGGCc -3'
miRNA:   3'- cgUGCGAGUAGCUcgUCCGUU----C-GUCG- -5'
30523 3' -54.5 NC_006548.1 + 14669 0.66 0.607881
Target:  5'- gGCGCuGCUCGcUGAGCagaAGGcCAAGCuggauGCg -3'
miRNA:   3'- -CGUG-CGAGUaGCUCG---UCC-GUUCGu----CG- -5'
30523 3' -54.5 NC_006548.1 + 36820 0.66 0.601024
Target:  5'- gGCGCgagGCUCucugCGAGCGucgccgagcuggugcGGCucAGCAGCu -3'
miRNA:   3'- -CGUG---CGAGua--GCUCGU---------------CCGu-UCGUCG- -5'
30523 3' -54.5 NC_006548.1 + 13613 0.66 0.596459
Target:  5'- cCGCGCaggCAcCGAGgaAGGUcAGCAGCa -3'
miRNA:   3'- cGUGCGa--GUaGCUCg-UCCGuUCGUCG- -5'
30523 3' -54.5 NC_006548.1 + 29918 0.66 0.596459
Target:  5'- cCACGCUUGUUGAugucCAGG--AGCAGCg -3'
miRNA:   3'- cGUGCGAGUAGCUc---GUCCguUCGUCG- -5'
30523 3' -54.5 NC_006548.1 + 1255 0.67 0.58507
Target:  5'- uGCGCGCgCGgugCG-GCAGGCuuGGCuuugAGCg -3'
miRNA:   3'- -CGUGCGaGUa--GCuCGUCCGu-UCG----UCG- -5'
30523 3' -54.5 NC_006548.1 + 34745 0.67 0.58507
Target:  5'- --cCGgUCA-CGAGCGGauGCAGGCAGUc -3'
miRNA:   3'- cguGCgAGUaGCUCGUC--CGUUCGUCG- -5'
30523 3' -54.5 NC_006548.1 + 19396 0.67 0.58507
Target:  5'- aGCuCGCUgcCGUCcAGCuGGUAGcGCAGCa -3'
miRNA:   3'- -CGuGCGA--GUAGcUCGuCCGUU-CGUCG- -5'
30523 3' -54.5 NC_006548.1 + 3580 0.67 0.572591
Target:  5'- -uGCGUaacggcuUCGUCGgcguAGCAGGU-AGCAGCc -3'
miRNA:   3'- cgUGCG-------AGUAGC----UCGUCCGuUCGUCG- -5'
30523 3' -54.5 NC_006548.1 + 32729 0.67 0.562428
Target:  5'- cGCGUGCUCcUCGAccucagccuuGCAGGCuggGGCGGg -3'
miRNA:   3'- -CGUGCGAGuAGCU----------CGUCCGu--UCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.