miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30523 5' -56.9 NC_006548.1 + 12824 0.66 0.528606
Target:  5'- -cGCGCGAGCGgC-GCgguaagucCGGUgUGGCu -3'
miRNA:   3'- gaCGCGCUCGCgGaCGa-------GCUAgAUCG- -5'
30523 5' -56.9 NC_006548.1 + 36814 0.66 0.517824
Target:  5'- -gGCGCGGccuuauGCGCCUGgC-CGGgugCUGGUg -3'
miRNA:   3'- gaCGCGCU------CGCGGAC-GaGCUa--GAUCG- -5'
30523 5' -56.9 NC_006548.1 + 33368 0.66 0.475643
Target:  5'- gCUGCGC-AGCGCCgcaUGCUCcucgcggccggaGGUCU-GCc -3'
miRNA:   3'- -GACGCGcUCGCGG---ACGAG------------CUAGAuCG- -5'
30523 5' -56.9 NC_006548.1 + 22876 0.67 0.465364
Target:  5'- -aGCGCuGGCugcaGCUUGCUaCGAaCUGGCg -3'
miRNA:   3'- gaCGCGcUCG----CGGACGA-GCUaGAUCG- -5'
30523 5' -56.9 NC_006548.1 + 24325 0.67 0.455201
Target:  5'- -gGCcgGCGAGCGCCUGCcCaa--UGGCa -3'
miRNA:   3'- gaCG--CGCUCGCGGACGaGcuagAUCG- -5'
30523 5' -56.9 NC_006548.1 + 26351 0.67 0.44516
Target:  5'- -aGCGCGcGGCGCgCUGgaugUCGGUC-AGCg -3'
miRNA:   3'- gaCGCGC-UCGCG-GACg---AGCUAGaUCG- -5'
30523 5' -56.9 NC_006548.1 + 31873 0.68 0.415801
Target:  5'- -gGCGa-AGCGCCUGauuUCGGUCUGuGCc -3'
miRNA:   3'- gaCGCgcUCGCGGACg--AGCUAGAU-CG- -5'
30523 5' -56.9 NC_006548.1 + 27081 0.68 0.415801
Target:  5'- cCUGaUGCGGGcCGUCUGCU-GAUC-GGCg -3'
miRNA:   3'- -GAC-GCGCUC-GCGGACGAgCUAGaUCG- -5'
30523 5' -56.9 NC_006548.1 + 1133 0.68 0.406281
Target:  5'- uCUGCGCGgccAGCaacGCCUGUgcggCGAUCauccGGCu -3'
miRNA:   3'- -GACGCGC---UCG---CGGACGa---GCUAGa---UCG- -5'
30523 5' -56.9 NC_006548.1 + 17748 0.68 0.406281
Target:  5'- -gGCGCGGGUGgccaucagaUCUGCUCccguccAUCUAGCu -3'
miRNA:   3'- gaCGCGCUCGC---------GGACGAGc-----UAGAUCG- -5'
30523 5' -56.9 NC_006548.1 + 9237 0.68 0.387659
Target:  5'- uUGCGCGu-CGCCUGUcgaUUGAUCacgGGCu -3'
miRNA:   3'- gACGCGCucGCGGACG---AGCUAGa--UCG- -5'
30523 5' -56.9 NC_006548.1 + 25524 0.68 0.378561
Target:  5'- -aGCGCGGaggcGUGCCUcgGCgCGAUCUguGGCg -3'
miRNA:   3'- gaCGCGCU----CGCGGA--CGaGCUAGA--UCG- -5'
30523 5' -56.9 NC_006548.1 + 34869 0.68 0.373171
Target:  5'- -gGUGCGcGCGCCUgguucaaugcccaugGCUUGGaCUGGCa -3'
miRNA:   3'- gaCGCGCuCGCGGA---------------CGAGCUaGAUCG- -5'
30523 5' -56.9 NC_006548.1 + 4676 0.68 0.369607
Target:  5'- uUGCGCGgggaaagcuuGGUGCCcaGUUCGggCUGGCc -3'
miRNA:   3'- gACGCGC----------UCGCGGa-CGAGCuaGAUCG- -5'
30523 5' -56.9 NC_006548.1 + 3686 0.69 0.360799
Target:  5'- aUGaCGCuGAGCGCCgagGCggUGAaCUGGCg -3'
miRNA:   3'- gAC-GCG-CUCGCGGa--CGa-GCUaGAUCG- -5'
30523 5' -56.9 NC_006548.1 + 25826 0.69 0.352138
Target:  5'- -aGCGgGAGgGCCUugGCUgGG-CUGGCa -3'
miRNA:   3'- gaCGCgCUCgCGGA--CGAgCUaGAUCG- -5'
30523 5' -56.9 NC_006548.1 + 22764 0.69 0.352138
Target:  5'- uCUGCGCcugaauggcAGCGacgagCUGCUCGAUCgccAGCg -3'
miRNA:   3'- -GACGCGc--------UCGCg----GACGAGCUAGa--UCG- -5'
30523 5' -56.9 NC_006548.1 + 13743 0.69 0.343626
Target:  5'- -cGCGCG---GCCUGCUCGAU--GGCg -3'
miRNA:   3'- gaCGCGCucgCGGACGAGCUAgaUCG- -5'
30523 5' -56.9 NC_006548.1 + 24026 0.69 0.32705
Target:  5'- -aGuCGCGAGCGCCUGCcaggccgggCGGUgUccAGCc -3'
miRNA:   3'- gaC-GCGCUCGCGGACGa--------GCUAgA--UCG- -5'
30523 5' -56.9 NC_006548.1 + 16020 0.69 0.319786
Target:  5'- aCUGCG-GAGCGCaCUGCUgacggccaugccgaCGAguucugggcgcugggUCUGGCg -3'
miRNA:   3'- -GACGCgCUCGCG-GACGA--------------GCU---------------AGAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.