miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30525 5' -54.3 NC_006548.1 + 27578 0.66 0.694706
Target:  5'- gCCGgCGAACAgcagccccuggaCCCGuCGAAUUGCAg -3'
miRNA:   3'- -GGCaGCUUGUag----------GGGC-GCUUGACGUg -5'
30525 5' -54.3 NC_006548.1 + 3995 0.66 0.68804
Target:  5'- gCGUC-AACAUCCaucaGCGGGgUGUACg -3'
miRNA:   3'- gGCAGcUUGUAGGgg--CGCUUgACGUG- -5'
30525 5' -54.3 NC_006548.1 + 19199 0.66 0.68804
Target:  5'- cCCGcUCGGAUcUCCCaGC--GCUGCGCu -3'
miRNA:   3'- -GGC-AGCUUGuAGGGgCGcuUGACGUG- -5'
30525 5' -54.3 NC_006548.1 + 33563 0.66 0.676887
Target:  5'- aCGUCGAGCG-CUUgGCGAucgACaGCGCg -3'
miRNA:   3'- gGCAGCUUGUaGGGgCGCU---UGaCGUG- -5'
30525 5' -54.3 NC_006548.1 + 23048 0.66 0.665689
Target:  5'- cCCGUC-AugAUCCagaCGCucgcGCUGCACg -3'
miRNA:   3'- -GGCAGcUugUAGGg--GCGcu--UGACGUG- -5'
30525 5' -54.3 NC_006548.1 + 30277 0.66 0.665689
Target:  5'- --uUCGAcaacacCAUCCCCGCGucCgGCACg -3'
miRNA:   3'- ggcAGCUu-----GUAGGGGCGCuuGaCGUG- -5'
30525 5' -54.3 NC_006548.1 + 12152 0.66 0.665689
Target:  5'- gCCGcCGAGCAguaUCgCCGCGuGCUGguUc -3'
miRNA:   3'- -GGCaGCUUGU---AGgGGCGCuUGACguG- -5'
30525 5' -54.3 NC_006548.1 + 36205 0.67 0.654459
Target:  5'- gCCGcCGAACuggaCCCCGCccGACcGCACc -3'
miRNA:   3'- -GGCaGCUUGua--GGGGCGc-UUGaCGUG- -5'
30525 5' -54.3 NC_006548.1 + 25937 0.67 0.643207
Target:  5'- uUCGUCGuAACggCCCgCGCGGGCcaGCAg -3'
miRNA:   3'- -GGCAGC-UUGuaGGG-GCGCUUGa-CGUg -5'
30525 5' -54.3 NC_006548.1 + 32653 0.67 0.643207
Target:  5'- -aGUCGAGCAa--CgGCGAucGCUGCGCc -3'
miRNA:   3'- ggCAGCUUGUaggGgCGCU--UGACGUG- -5'
30525 5' -54.3 NC_006548.1 + 22613 0.68 0.586997
Target:  5'- gCCGUCGAuCAggcucUCCuCCGCcGGcgGCUGUGCg -3'
miRNA:   3'- -GGCAGCUuGU-----AGG-GGCG-CU--UGACGUG- -5'
30525 5' -54.3 NC_006548.1 + 34576 0.68 0.542676
Target:  5'- gCCGUCGAACGgcgacuUgCCCG-GAaggaauggcACUGCACc -3'
miRNA:   3'- -GGCAGCUUGU------AgGGGCgCU---------UGACGUG- -5'
30525 5' -54.3 NC_006548.1 + 33284 0.69 0.531758
Target:  5'- uCCGUUGGcagACcUCCggCCGCGAggagcaugcggcGCUGCGCa -3'
miRNA:   3'- -GGCAGCU---UGuAGG--GGCGCU------------UGACGUG- -5'
30525 5' -54.3 NC_006548.1 + 18796 0.69 0.520921
Target:  5'- gCGUCGAGCAgcacggCCUGCG-GCUGgGCg -3'
miRNA:   3'- gGCAGCUUGUag----GGGCGCuUGACgUG- -5'
30525 5' -54.3 NC_006548.1 + 32436 0.69 0.520921
Target:  5'- gCCaUCG-GCGUCCUCGCGAucgauCUGCGa -3'
miRNA:   3'- -GGcAGCuUGUAGGGGCGCUu----GACGUg -5'
30525 5' -54.3 NC_006548.1 + 4312 0.69 0.51017
Target:  5'- gCCGUC-AACAacgccaCCCGCGccCUGCGCa -3'
miRNA:   3'- -GGCAGcUUGUag----GGGCGCuuGACGUG- -5'
30525 5' -54.3 NC_006548.1 + 2000 0.69 0.51017
Target:  5'- gCCG-CGGGCAagCgCGCGcGGCUGCACc -3'
miRNA:   3'- -GGCaGCUUGUagGgGCGC-UUGACGUG- -5'
30525 5' -54.3 NC_006548.1 + 7000 0.69 0.488957
Target:  5'- aUGUCGAucagcGCgAUCagCCGCGcGCUGCACa -3'
miRNA:   3'- gGCAGCU-----UG-UAGg-GGCGCuUGACGUG- -5'
30525 5' -54.3 NC_006548.1 + 35368 0.7 0.468167
Target:  5'- cCCGUCGAagaaaGCAguggugaCCCCGCgGAACgcagGUACc -3'
miRNA:   3'- -GGCAGCU-----UGUa------GGGGCG-CUUGa---CGUG- -5'
30525 5' -54.3 NC_006548.1 + 18640 0.7 0.44784
Target:  5'- gCCGUgCGGGCuUCCaCGCcAGCUGCGCu -3'
miRNA:   3'- -GGCA-GCUUGuAGGgGCGcUUGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.