miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30526 5' -59.3 NC_006548.1 + 2440 0.66 0.388217
Target:  5'- cAGCCgGCUCGGaUGGaaaACCGCCGg--- -3'
miRNA:   3'- -UUGG-CGAGCC-ACCgg-UGGCGGUaagu -5'
30526 5' -59.3 NC_006548.1 + 22811 0.66 0.388217
Target:  5'- cGCCGCuUCGGgacUGGCCACuucauCGCCGg--- -3'
miRNA:   3'- uUGGCG-AGCC---ACCGGUG-----GCGGUaagu -5'
30526 5' -59.3 NC_006548.1 + 29884 0.66 0.388217
Target:  5'- uGCCcgGCUgGGUugcGGCCGCCGCCc---- -3'
miRNA:   3'- uUGG--CGAgCCA---CCGGUGGCGGuaagu -5'
30526 5' -59.3 NC_006548.1 + 27729 0.66 0.37918
Target:  5'- -cCCGCcUGGUGGCgGCCGCgAa--- -3'
miRNA:   3'- uuGGCGaGCCACCGgUGGCGgUaagu -5'
30526 5' -59.3 NC_006548.1 + 31726 0.66 0.361533
Target:  5'- cAGCCaCUCGGgcgaggGGCCGCCauccagGCCAUcCAg -3'
miRNA:   3'- -UUGGcGAGCCa-----CCGGUGG------CGGUAaGU- -5'
30526 5' -59.3 NC_006548.1 + 11295 0.66 0.352074
Target:  5'- aAGCCGCU-GGUGGCaucugaacgaacgUACUGCCAUa-- -3'
miRNA:   3'- -UUGGCGAgCCACCG-------------GUGGCGGUAagu -5'
30526 5' -59.3 NC_006548.1 + 14468 0.67 0.307445
Target:  5'- uGGCCGcCUCGGUGcuggcacgaauugccGCCAgCCGCCGcUCc -3'
miRNA:   3'- -UUGGC-GAGCCAC---------------CGGU-GGCGGUaAGu -5'
30526 5' -59.3 NC_006548.1 + 31587 0.68 0.267962
Target:  5'- gAGCCGCauaCGuacUGGCCGCCGCUguAUUCGa -3'
miRNA:   3'- -UUGGCGa--GCc--ACCGGUGGCGG--UAAGU- -5'
30526 5' -59.3 NC_006548.1 + 31188 0.69 0.247852
Target:  5'- -gUCGCUCGGcugGGUCACCGaCCGggcUUCGg -3'
miRNA:   3'- uuGGCGAGCCa--CCGGUGGC-GGU---AAGU- -5'
30526 5' -59.3 NC_006548.1 + 29561 0.7 0.18972
Target:  5'- cACCGCaggcggaacUCuGGUGGCUggugcgGCUGCCAUUCAg -3'
miRNA:   3'- uUGGCG---------AG-CCACCGG------UGGCGGUAAGU- -5'
30526 5' -59.3 NC_006548.1 + 18445 1.06 0.000342
Target:  5'- gAACCGCUCGGUGGCCACCGCCAUUCAa -3'
miRNA:   3'- -UUGGCGAGCCACCGGUGGCGGUAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.