miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30527 3' -60 NC_006548.1 + 21181 0.66 0.361077
Target:  5'- aUGGCAGCUCggacgGCCuGGCCgcCCa -3'
miRNA:   3'- aACCGUCGGGaacagCGG-CCGGauGG- -5'
30527 3' -60 NC_006548.1 + 29410 0.66 0.361077
Target:  5'- -aGGCGGUCagccgaUCGCUGGCCgacguUGCCg -3'
miRNA:   3'- aaCCGUCGGgaac--AGCGGCCGG-----AUGG- -5'
30527 3' -60 NC_006548.1 + 7770 0.66 0.361077
Target:  5'- -cGGCAGCUCaugcgcucgaUGUCGUCuaggucgaGGCCUGCa -3'
miRNA:   3'- aaCCGUCGGGa---------ACAGCGG--------CCGGAUGg -5'
30527 3' -60 NC_006548.1 + 20845 0.66 0.352508
Target:  5'- -cGGCAGCaggcg--GCCGGCCUugACCa -3'
miRNA:   3'- aaCCGUCGggaacagCGGCCGGA--UGG- -5'
30527 3' -60 NC_006548.1 + 37393 0.66 0.34325
Target:  5'- -cGGCAGCguggcgacgcgccCCUUGaCGaCCGG-CUGCCu -3'
miRNA:   3'- aaCCGUCG-------------GGAACaGC-GGCCgGAUGG- -5'
30527 3' -60 NC_006548.1 + 35507 0.66 0.327674
Target:  5'- -gGGUucaucGCCUUcaccugGUCGCCGGCCagGCUg -3'
miRNA:   3'- aaCCGu----CGGGAa-----CAGCGGCCGGa-UGG- -5'
30527 3' -60 NC_006548.1 + 570 0.67 0.31185
Target:  5'- -cGGCAGCUgUUccagGCCGGCC-GCCu -3'
miRNA:   3'- aaCCGUCGGgAAcag-CGGCCGGaUGG- -5'
30527 3' -60 NC_006548.1 + 19079 0.67 0.309527
Target:  5'- gUGGguGCCCUggcgGccgggaaaUCGCCaguuccggcucgggGGCCUACa -3'
miRNA:   3'- aACCguCGGGAa---C--------AGCGG--------------CCGGAUGg -5'
30527 3' -60 NC_006548.1 + 10219 0.67 0.304158
Target:  5'- -cGaGCAGCUCUUGcUGgaGGUCUACCg -3'
miRNA:   3'- aaC-CGUCGGGAACaGCggCCGGAUGG- -5'
30527 3' -60 NC_006548.1 + 28530 0.67 0.304158
Target:  5'- --cGCAGUCCUgcucggCGCCGGCCaggucgcggcgcUACCc -3'
miRNA:   3'- aacCGUCGGGAaca---GCGGCCGG------------AUGG- -5'
30527 3' -60 NC_006548.1 + 32394 0.67 0.304158
Target:  5'- aUGGCAucaGCCUg----GCCGGCCaGCCg -3'
miRNA:   3'- aACCGU---CGGGaacagCGGCCGGaUGG- -5'
30527 3' -60 NC_006548.1 + 12296 0.67 0.30188
Target:  5'- cUGGCGcaguuuauGCCCgguaccgcugagUGgaUCGCCGGCCUguauccgGCCg -3'
miRNA:   3'- aACCGU--------CGGGa-----------AC--AGCGGCCGGA-------UGG- -5'
30527 3' -60 NC_006548.1 + 8474 0.67 0.289215
Target:  5'- --uGCAGaCCCUcaucGagGCCGGCCUgGCCg -3'
miRNA:   3'- aacCGUC-GGGAa---CagCGGCCGGA-UGG- -5'
30527 3' -60 NC_006548.1 + 22139 0.67 0.281962
Target:  5'- -cGGCAccauGCCCUcGUCGCCGagggaGCCguuauaUGCCu -3'
miRNA:   3'- aaCCGU----CGGGAaCAGCGGC-----CGG------AUGG- -5'
30527 3' -60 NC_006548.1 + 12196 0.67 0.274853
Target:  5'- -cGGCGGCCCgcgGgaucUCaUCGGCCUugGCCg -3'
miRNA:   3'- aaCCGUCGGGaa-C----AGcGGCCGGA--UGG- -5'
30527 3' -60 NC_006548.1 + 9523 0.68 0.267889
Target:  5'- -aGGCuGCUCUggUGcgCGUCGGCCaggUGCCa -3'
miRNA:   3'- aaCCGuCGGGA--ACa-GCGGCCGG---AUGG- -5'
30527 3' -60 NC_006548.1 + 8696 0.68 0.261069
Target:  5'- -gGGCGGgCCUggaGUCcCUGGCCUggcACCa -3'
miRNA:   3'- aaCCGUCgGGAa--CAGcGGCCGGA---UGG- -5'
30527 3' -60 NC_006548.1 + 12109 0.68 0.254389
Target:  5'- -cGGCGGuUUCUUcUCGUCGGCCaagGCCg -3'
miRNA:   3'- aaCCGUC-GGGAAcAGCGGCCGGa--UGG- -5'
30527 3' -60 NC_006548.1 + 31664 0.69 0.22907
Target:  5'- aUGGCGGCCCc--UCGCCcgaguGG-CUGCCg -3'
miRNA:   3'- aACCGUCGGGaacAGCGG-----CCgGAUGG- -5'
30527 3' -60 NC_006548.1 + 30665 0.69 0.21665
Target:  5'- gUGGCaggaugaAGCCCg---CGCCGGCCgACUc -3'
miRNA:   3'- aACCG-------UCGGGaacaGCGGCCGGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.