miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30528 3' -56.4 NC_006548.1 + 22153 0.66 0.567217
Target:  5'- uGCaGGAAGGCCaUCgGCAC-CAUGCCc -3'
miRNA:   3'- gCGgCUUUUCGG-GGaCGUGaGUGCGG- -5'
30528 3' -56.4 NC_006548.1 + 23096 0.66 0.567217
Target:  5'- gGCCGuaguGgCCgUGUACaUCACGCUg -3'
miRNA:   3'- gCGGCuuuuCgGGgACGUG-AGUGCGG- -5'
30528 3' -56.4 NC_006548.1 + 6535 0.66 0.567217
Target:  5'- gGCCGAAccaGGGUCCaucaucaggaUGCGuggCACGCCg -3'
miRNA:   3'- gCGGCUU---UUCGGGg---------ACGUga-GUGCGG- -5'
30528 3' -56.4 NC_006548.1 + 4160 0.66 0.556202
Target:  5'- cCGCgGGAGGGUcaCCUUGCAuCUCGucaGCCu -3'
miRNA:   3'- -GCGgCUUUUCG--GGGACGU-GAGUg--CGG- -5'
30528 3' -56.4 NC_006548.1 + 28143 0.66 0.55291
Target:  5'- gGCCGguGAGUCgggguucaucgacaCCUuCACUCAgGCCg -3'
miRNA:   3'- gCGGCuuUUCGG--------------GGAcGUGAGUgCGG- -5'
30528 3' -56.4 NC_006548.1 + 24325 0.66 0.54525
Target:  5'- gGCCGgcGAGCgCCUGCccaauggcaaACUgagCAgGCCg -3'
miRNA:   3'- gCGGCuuUUCGgGGACG----------UGA---GUgCGG- -5'
30528 3' -56.4 NC_006548.1 + 23479 0.66 0.54525
Target:  5'- aCGCCcuGAAaUUCCUGCAgCUCAuCGCCg -3'
miRNA:   3'- -GCGGcuUUUcGGGGACGU-GAGU-GCGG- -5'
30528 3' -56.4 NC_006548.1 + 18735 0.66 0.54525
Target:  5'- aGCCGc--AGgCCgUGCuGCUCgACGCCa -3'
miRNA:   3'- gCGGCuuuUCgGGgACG-UGAG-UGCGG- -5'
30528 3' -56.4 NC_006548.1 + 9088 0.66 0.54525
Target:  5'- gCGCCGGAAcuggaagaccugGGUgCC-GCGCUCGC-CCu -3'
miRNA:   3'- -GCGGCUUU------------UCGgGGaCGUGAGUGcGG- -5'
30528 3' -56.4 NC_006548.1 + 37280 0.66 0.544159
Target:  5'- gGCCGGuguuAGGCCCCauauagagagucaUGCGgaaACGCCu -3'
miRNA:   3'- gCGGCUu---UUCGGGG-------------ACGUgagUGCGG- -5'
30528 3' -56.4 NC_006548.1 + 14852 0.66 0.534369
Target:  5'- -aCCGAuccGAGCCgCCUGaaGCUCAUGCa -3'
miRNA:   3'- gcGGCUu--UUCGG-GGACg-UGAGUGCGg -5'
30528 3' -56.4 NC_006548.1 + 35942 0.66 0.534369
Target:  5'- aCGCCGcc-GGCCgC-GCGgaUCGCGCCg -3'
miRNA:   3'- -GCGGCuuuUCGGgGaCGUg-AGUGCGG- -5'
30528 3' -56.4 NC_006548.1 + 19640 0.66 0.523565
Target:  5'- gCGCCuGAAAGGCCCUacaCGCgugaACGCUg -3'
miRNA:   3'- -GCGG-CUUUUCGGGGac-GUGag--UGCGG- -5'
30528 3' -56.4 NC_006548.1 + 9937 0.66 0.523565
Target:  5'- cCGCCau--GGCCgCUGCAaccaaagccCUCACgGCCg -3'
miRNA:   3'- -GCGGcuuuUCGGgGACGU---------GAGUG-CGG- -5'
30528 3' -56.4 NC_006548.1 + 23538 0.66 0.52034
Target:  5'- cCGCUGAccccgccaggcgguGGGGUUCCgcagGUACUgGCGCCc -3'
miRNA:   3'- -GCGGCU--------------UUUCGGGGa---CGUGAgUGCGG- -5'
30528 3' -56.4 NC_006548.1 + 25772 0.67 0.512846
Target:  5'- aGCC--AAGGCCCUccCGCUCACGUg -3'
miRNA:   3'- gCGGcuUUUCGGGGacGUGAGUGCGg -5'
30528 3' -56.4 NC_006548.1 + 20449 0.67 0.512846
Target:  5'- aGCUGGucGGCCCguucgGCGCcuUCGCGCUc -3'
miRNA:   3'- gCGGCUuuUCGGGga---CGUG--AGUGCGG- -5'
30528 3' -56.4 NC_006548.1 + 4339 0.67 0.512846
Target:  5'- aCGCCGGAGcuGGCCCgaUGCcUggAUGCCg -3'
miRNA:   3'- -GCGGCUUU--UCGGGg-ACGuGagUGCGG- -5'
30528 3' -56.4 NC_006548.1 + 7132 0.67 0.502218
Target:  5'- uGCCcc-GAGUCCUUGCgccGCUUACGCg -3'
miRNA:   3'- gCGGcuuUUCGGGGACG---UGAGUGCGg -5'
30528 3' -56.4 NC_006548.1 + 36102 0.67 0.502218
Target:  5'- gCGCCGGAAagaucgacuauGGCaCCCUcacgagggGCAC-CAuCGCCa -3'
miRNA:   3'- -GCGGCUUU-----------UCG-GGGA--------CGUGaGU-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.