miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30528 5' -53.5 NC_006548.1 + 22928 0.66 0.708552
Target:  5'- uUGGGCcggacuaucGGgGUGGAcuGGCC-GCCgGCCu -3'
miRNA:   3'- -ACCCG---------CCgUACUUuuUCGGuUGG-CGG- -5'
30528 5' -53.5 NC_006548.1 + 6506 0.66 0.708552
Target:  5'- aGGGCGGCGcGGGuuacgggcucGGUCGAaaaCGCCc -3'
miRNA:   3'- aCCCGCCGUaCUUuu--------UCGGUUg--GCGG- -5'
30528 5' -53.5 NC_006548.1 + 21204 0.66 0.697263
Target:  5'- cGGGCGGC--GAu--GGC--GCCGCUg -3'
miRNA:   3'- aCCCGCCGuaCUuuuUCGguUGGCGG- -5'
30528 5' -53.5 NC_006548.1 + 16985 0.66 0.697263
Target:  5'- -aGGCGGagcUGcuGGAAGCCGggcgcuccgggACCGCCg -3'
miRNA:   3'- acCCGCCgu-ACu-UUUUCGGU-----------UGGCGG- -5'
30528 5' -53.5 NC_006548.1 + 34349 0.66 0.697263
Target:  5'- aGcGCGGCAUcGAGcAAcacacGGgCAACCGCCu -3'
miRNA:   3'- aCcCGCCGUA-CUU-UU-----UCgGUUGGCGG- -5'
30528 5' -53.5 NC_006548.1 + 35007 0.66 0.685905
Target:  5'- aUGGGCGGCcguagcAAAGCgcaAACUGUCg -3'
miRNA:   3'- -ACCCGCCGuacuu-UUUCGg--UUGGCGG- -5'
30528 5' -53.5 NC_006548.1 + 8808 0.66 0.684766
Target:  5'- gUGGGCGGCcgccagguagcguGUGAuc-AGCgGAauGCCa -3'
miRNA:   3'- -ACCCGCCG-------------UACUuuuUCGgUUggCGG- -5'
30528 5' -53.5 NC_006548.1 + 29281 0.66 0.674491
Target:  5'- --cGCGGCcgGAuc--GCCAGuuGCCu -3'
miRNA:   3'- accCGCCGuaCUuuuuCGGUUggCGG- -5'
30528 5' -53.5 NC_006548.1 + 29776 0.66 0.674491
Target:  5'- -cGGCGaaGCcgaacaugcugGUGAucGAGgacAGCCAGCCGCCa -3'
miRNA:   3'- acCCGC--CG-----------UACU--UUU---UCGGUUGGCGG- -5'
30528 5' -53.5 NC_006548.1 + 22551 0.66 0.674491
Target:  5'- -cGGCGGag-GAGAGccugaucgacGGCCAACUgGCCg -3'
miRNA:   3'- acCCGCCguaCUUUU----------UCGGUUGG-CGG- -5'
30528 5' -53.5 NC_006548.1 + 22436 0.66 0.674491
Target:  5'- cUGGGCGGCc-------GCUcuGGCCGCCc -3'
miRNA:   3'- -ACCCGCCGuacuuuuuCGG--UUGGCGG- -5'
30528 5' -53.5 NC_006548.1 + 28328 0.66 0.674491
Target:  5'- uUGcGGCGcGCGUGAAc-GGUC--CCGCCg -3'
miRNA:   3'- -AC-CCGC-CGUACUUuuUCGGuuGGCGG- -5'
30528 5' -53.5 NC_006548.1 + 3848 0.66 0.674491
Target:  5'- gUGGcCGGCgAUGAAGAGGUCGAUgaGCUu -3'
miRNA:   3'- -ACCcGCCG-UACUUUUUCGGUUGg-CGG- -5'
30528 5' -53.5 NC_006548.1 + 22004 0.66 0.663033
Target:  5'- ---uCGGCGUGcu-GGGCCGucgcACCGCCa -3'
miRNA:   3'- acccGCCGUACuuuUUCGGU----UGGCGG- -5'
30528 5' -53.5 NC_006548.1 + 14716 0.66 0.663033
Target:  5'- aGGGCGGaGUGAccGAGgCGACCaaGCa -3'
miRNA:   3'- aCCCGCCgUACUuuUUCgGUUGG--CGg -5'
30528 5' -53.5 NC_006548.1 + 6844 0.66 0.663033
Target:  5'- gGGGCGaaCA--AGAAGGCUAGCgGCCu -3'
miRNA:   3'- aCCCGCc-GUacUUUUUCGGUUGgCGG- -5'
30528 5' -53.5 NC_006548.1 + 2483 0.66 0.663033
Target:  5'- aUGGGCGaCGUGcu--GGCCAGCaugGCUg -3'
miRNA:   3'- -ACCCGCcGUACuuuuUCGGUUGg--CGG- -5'
30528 5' -53.5 NC_006548.1 + 20401 0.66 0.663033
Target:  5'- -aGGCGGCGcagGAucucggucAGAGCCGucACCGCg -3'
miRNA:   3'- acCCGCCGUa--CUu-------UUUCGGU--UGGCGg -5'
30528 5' -53.5 NC_006548.1 + 11573 0.67 0.653843
Target:  5'- gGGGCaGCAUGGAGucucccuacucacuGCCcuguaauuucccgauACCGCCg -3'
miRNA:   3'- aCCCGcCGUACUUUuu------------CGGu--------------UGGCGG- -5'
30528 5' -53.5 NC_006548.1 + 29820 0.67 0.652693
Target:  5'- cGGGCGGCGgccgcaacccAGCCGGgcaugaccCCGCUg -3'
miRNA:   3'- aCCCGCCGUacuuuu----UCGGUU--------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.