miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30529 3' -50.1 NC_006548.1 + 32729 0.66 0.880039
Target:  5'- -aCGcCGGGGUG-ACA---GGCGCAGCg -3'
miRNA:   3'- ugGC-GUUCUACaUGUucuUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 15423 0.66 0.880039
Target:  5'- gGCCGacgauGAGAUccaggGCAuggauGAGGCGCAGUa -3'
miRNA:   3'- -UGGCg----UUCUAca---UGUu----CUUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 35972 0.66 0.866572
Target:  5'- gACUGCAAcGUGUcgacgucggcuauccGCAAGcuccAGGUGCGGCu -3'
miRNA:   3'- -UGGCGUUcUACA---------------UGUUC----UUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 4718 0.66 0.854195
Target:  5'- -gCGCAAcGGUGacguacGCGAGGuGGUGCAGCg -3'
miRNA:   3'- ugGCGUU-CUACa-----UGUUCU-UCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 22118 0.66 0.854195
Target:  5'- aGCUGCuGGAacUGgacGCGAucuacaucggcGAAGCGCGGCu -3'
miRNA:   3'- -UGGCGuUCU--ACa--UGUU-----------CUUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 1427 0.66 0.84503
Target:  5'- gAUCGagaAAGucggGUACAAGAuGCGCgAGCu -3'
miRNA:   3'- -UGGCg--UUCua--CAUGUUCUuCGCG-UCG- -5'
30529 3' -50.1 NC_006548.1 + 29651 0.66 0.84503
Target:  5'- uGCCGCugccAGcgGUGCcGGugcggcAGGUGCGGCu -3'
miRNA:   3'- -UGGCGu---UCuaCAUGuUC------UUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 12190 0.67 0.831767
Target:  5'- cCCGCGGGAucucaucggccuUGgccgACGAGAAGaaaccgccggccaGCAGCa -3'
miRNA:   3'- uGGCGUUCU------------ACa---UGUUCUUCg------------CGUCG- -5'
30529 3' -50.1 NC_006548.1 + 27896 0.67 0.829833
Target:  5'- gGCgaGCAGGAUGccauugguuuccugGCGgguGAGGUGCAGCg -3'
miRNA:   3'- -UGg-CGUUCUACa-------------UGUu--CUUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 35499 0.67 0.825936
Target:  5'- aACCGCGacuGGGgccgugGCAAGGAuCGCGGCc -3'
miRNA:   3'- -UGGCGU---UCUaca---UGUUCUUcGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 18033 0.67 0.825936
Target:  5'- aGCUGCAGGcgGU-CAAG-GGCG-AGCg -3'
miRNA:   3'- -UGGCGUUCuaCAuGUUCuUCGCgUCG- -5'
30529 3' -50.1 NC_006548.1 + 8499 0.68 0.778609
Target:  5'- cCCGuCAAGGUGUguccuuucaGCGcgaucagaacgcgcaGGAcGCGCAGCg -3'
miRNA:   3'- uGGC-GUUCUACA---------UGU---------------UCUuCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 11975 0.68 0.774299
Target:  5'- aGCC-CAGGAcGaucaGCGAGcGGCGCAGCc -3'
miRNA:   3'- -UGGcGUUCUaCa---UGUUCuUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 861 0.68 0.774299
Target:  5'- cCCGcCGAGGUccagGU-CAucGAGGCGCAGCu -3'
miRNA:   3'- uGGC-GUUCUA----CAuGUu-CUUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 16433 0.68 0.752361
Target:  5'- aGCCGCGAG-UGgaaGguGGAAGC-CGGCg -3'
miRNA:   3'- -UGGCGUUCuACa--UguUCUUCGcGUCG- -5'
30529 3' -50.1 NC_006548.1 + 7811 0.68 0.752361
Target:  5'- uGCCGCGAGcUGcGCAAGGcucuGCGCGa- -3'
miRNA:   3'- -UGGCGUUCuACaUGUUCUu---CGCGUcg -5'
30529 3' -50.1 NC_006548.1 + 6808 0.68 0.752361
Target:  5'- gAUCGCAAGGaGUucuACAAGAacaAGC-CAGCg -3'
miRNA:   3'- -UGGCGUUCUaCA---UGUUCU---UCGcGUCG- -5'
30529 3' -50.1 NC_006548.1 + 13090 0.69 0.729855
Target:  5'- aGCUGCAGGu----UGAGcAGCGCAGCg -3'
miRNA:   3'- -UGGCGUUCuacauGUUCuUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 9581 0.69 0.695286
Target:  5'- cGCaCGCGAucaGUGCAucGAGCGCGGCg -3'
miRNA:   3'- -UG-GCGUUcuaCAUGUucUUCGCGUCG- -5'
30529 3' -50.1 NC_006548.1 + 29561 0.69 0.695286
Target:  5'- cACCGCAGGcgGaACucuGGuggcuGGUGCGGCu -3'
miRNA:   3'- -UGGCGUUCuaCaUGu--UCu----UCGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.