miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30529 5' -60.2 NC_006548.1 + 23805 0.66 0.337895
Target:  5'- -cGCCGGcCaUGCCGGuggcGCGACCCGGc -3'
miRNA:   3'- gaCGGCCuGaGUGGUC----CGUUGGGCCa -5'
30529 5' -60.2 NC_006548.1 + 29947 0.66 0.329821
Target:  5'- -cGCCGGACcagUCAUgCAGcGCAGCCCa-- -3'
miRNA:   3'- gaCGGCCUG---AGUG-GUC-CGUUGGGcca -5'
30529 5' -60.2 NC_006548.1 + 26127 0.66 0.329021
Target:  5'- gUGCCGGcggauguggaaguGCUCAacgaCAucaacGGCGACCUGGUc -3'
miRNA:   3'- gACGGCC-------------UGAGUg---GU-----CCGUUGGGCCA- -5'
30529 5' -60.2 NC_006548.1 + 7280 0.67 0.314103
Target:  5'- gCUGCCGGuCgaggucaACCAGGC-GCUgGGUg -3'
miRNA:   3'- -GACGGCCuGag-----UGGUCCGuUGGgCCA- -5'
30529 5' -60.2 NC_006548.1 + 34975 0.67 0.314103
Target:  5'- aUGCCGGcAUUC-CCucGGCAACgaaCCGGUg -3'
miRNA:   3'- gACGGCC-UGAGuGGu-CCGUUG---GGCCA- -5'
30529 5' -60.2 NC_006548.1 + 20084 0.67 0.306459
Target:  5'- aUGCCGaGCcgCACCAGGUggUgCCGGa -3'
miRNA:   3'- gACGGCcUGa-GUGGUCCGuuG-GGCCa -5'
30529 5' -60.2 NC_006548.1 + 17067 0.68 0.270379
Target:  5'- -gGUCGGGCUCgGCCAGGUGgcgaguACCCaGGg -3'
miRNA:   3'- gaCGGCCUGAG-UGGUCCGU------UGGG-CCa -5'
30529 5' -60.2 NC_006548.1 + 18222 0.68 0.270379
Target:  5'- -aGCUGGcaUCGCUGGGCAaggacgGCCCGGa -3'
miRNA:   3'- gaCGGCCugAGUGGUCCGU------UGGGCCa -5'
30529 5' -60.2 NC_006548.1 + 19065 0.68 0.270379
Target:  5'- -gGCCGGGaaaUCGCCAGuucCGGCUCGGg -3'
miRNA:   3'- gaCGGCCUg--AGUGGUCc--GUUGGGCCa -5'
30529 5' -60.2 NC_006548.1 + 13706 0.68 0.263586
Target:  5'- gCUGUucaUGG-UUCGCCAGGCGuGCCUGGUc -3'
miRNA:   3'- -GACG---GCCuGAGUGGUCCGU-UGGGCCA- -5'
30529 5' -60.2 NC_006548.1 + 20834 0.69 0.231689
Target:  5'- -gGCCGGcCUUgACCAGGCcuucggcgAACUCGGUg -3'
miRNA:   3'- gaCGGCCuGAG-UGGUCCG--------UUGGGCCA- -5'
30529 5' -60.2 NC_006548.1 + 14931 0.7 0.203107
Target:  5'- uCUGCCGGgACUUcugcaugagcuUCAGGCGGCUCGGa -3'
miRNA:   3'- -GACGGCC-UGAGu----------GGUCCGUUGGGCCa -5'
30529 5' -60.2 NC_006548.1 + 16992 0.72 0.142765
Target:  5'- gCUGCUGGAa--GCCGGGCGcUCCGGg -3'
miRNA:   3'- -GACGGCCUgagUGGUCCGUuGGGCCa -5'
30529 5' -60.2 NC_006548.1 + 5567 0.72 0.138491
Target:  5'- uUGCCGGGgUCAgcaagacCCAGGCcGACCUGGc -3'
miRNA:   3'- gACGGCCUgAGU-------GGUCCG-UUGGGCCa -5'
30529 5' -60.2 NC_006548.1 + 31125 0.74 0.099242
Target:  5'- uUGCCGGAg-CGCCAGGCggUuuGGa -3'
miRNA:   3'- gACGGCCUgaGUGGUCCGuuGggCCa -5'
30529 5' -60.2 NC_006548.1 + 35997 0.76 0.074625
Target:  5'- cCUGCCGGccaACUCGCCGgucGGUAgGCCCGGa -3'
miRNA:   3'- -GACGGCC---UGAGUGGU---CCGU-UGGGCCa -5'
30529 5' -60.2 NC_006548.1 + 22294 0.76 0.074625
Target:  5'- uUGCgGGugUCgGCCAGGCGAUCgCGGUa -3'
miRNA:   3'- gACGgCCugAG-UGGUCCGUUGG-GCCA- -5'
30529 5' -60.2 NC_006548.1 + 5472 0.77 0.056577
Target:  5'- -cGCCGGGCUCaggucgaccgcucgaGCCAGGuCGGCCUGGg -3'
miRNA:   3'- gaCGGCCUGAG---------------UGGUCC-GUUGGGCCa -5'
30529 5' -60.2 NC_006548.1 + 20166 1.06 0.000311
Target:  5'- cCUGCCGGACUCACCAGGCAACCCGGUu -3'
miRNA:   3'- -GACGGCCUGAGUGGUCCGUUGGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.