miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30530 5' -65.9 NC_006548.1 + 848 0.66 0.191292
Target:  5'- uGCCGGCggcuCGCUUGCUggGCUGUgguuGCCAGc -3'
miRNA:   3'- cCGGCCG----GCGGACGA--CGGCG----CGGUCu -5'
30530 5' -65.9 NC_006548.1 + 36594 0.66 0.191292
Target:  5'- cGGCCGGCa-CCgcGgUGCuCGCGCgGGGa -3'
miRNA:   3'- -CCGGCCGgcGGa-CgACG-GCGCGgUCU- -5'
30530 5' -65.9 NC_006548.1 + 36639 0.66 0.191292
Target:  5'- uGCCGGCCGCggcGUUGaUCGCGUCGa- -3'
miRNA:   3'- cCGGCCGGCGga-CGAC-GGCGCGGUcu -5'
30530 5' -65.9 NC_006548.1 + 29623 0.66 0.190798
Target:  5'- cGGCCgcgaaugGGCuCGCaggugCUGgUGCCGCuGCCAGc -3'
miRNA:   3'- -CCGG-------CCG-GCG-----GACgACGGCG-CGGUCu -5'
30530 5' -65.9 NC_006548.1 + 24324 0.66 0.186402
Target:  5'- gGGCCGGCgagCGCCUGCccaauggcaaacUGagcaggccgguCUGgGCCGGAa -3'
miRNA:   3'- -CCGGCCG---GCGGACG------------AC-----------GGCgCGGUCU- -5'
30530 5' -65.9 NC_006548.1 + 22800 0.66 0.186402
Target:  5'- aGGCCGGgCGCUaccaggUGCUGCUcaGCGaCGGu -3'
miRNA:   3'- -CCGGCCgGCGG------ACGACGG--CGCgGUCu -5'
30530 5' -65.9 NC_006548.1 + 14453 0.66 0.186402
Target:  5'- uGGCaCGaauuGCCGCCaGCcGCCGCuCCAGc -3'
miRNA:   3'- -CCG-GC----CGGCGGaCGaCGGCGcGGUCu -5'
30530 5' -65.9 NC_006548.1 + 29113 0.66 0.181623
Target:  5'- aGGCCGGUcuCGUCaGCgaacugGCCGCGCggCAGc -3'
miRNA:   3'- -CCGGCCG--GCGGaCGa-----CGGCGCG--GUCu -5'
30530 5' -65.9 NC_006548.1 + 26983 0.66 0.181623
Target:  5'- aGCUGGCCGUaaGCUGagcaGCGUCGGc -3'
miRNA:   3'- cCGGCCGGCGgaCGACgg--CGCGGUCu -5'
30530 5' -65.9 NC_006548.1 + 8936 0.66 0.176953
Target:  5'- uGGCCaacGGCCGaUUGCcGCUGUGCCuGGu -3'
miRNA:   3'- -CCGG---CCGGCgGACGaCGGCGCGGuCU- -5'
30530 5' -65.9 NC_006548.1 + 20060 0.66 0.176492
Target:  5'- gGGgUGGCCgaugacgagcgggGCCUcGCUGa-GCGCCGGAu -3'
miRNA:   3'- -CCgGCCGG-------------CGGA-CGACggCGCGGUCU- -5'
30530 5' -65.9 NC_006548.1 + 22782 0.66 0.172842
Target:  5'- cGGCCGGCacgagcaccuucugCGCCUgaauggcagcgacgaGCUGCuCGauCGCCAGc -3'
miRNA:   3'- -CCGGCCG--------------GCGGA---------------CGACG-GC--GCGGUCu -5'
30530 5' -65.9 NC_006548.1 + 29286 0.66 0.172842
Target:  5'- cGGCUGGCCGCCgaccagcucacuuugGCU-CUGCGauCCGGu -3'
miRNA:   3'- -CCGGCCGGCGGa--------------CGAcGGCGC--GGUCu -5'
30530 5' -65.9 NC_006548.1 + 32868 0.66 0.17239
Target:  5'- cGCCGGCCGCggugacGCuUGCCaGCaGCUGGAu -3'
miRNA:   3'- cCGGCCGGCGga----CG-ACGG-CG-CGGUCU- -5'
30530 5' -65.9 NC_006548.1 + 20654 0.66 0.169703
Target:  5'- aGGuCCGGUCaGCCU-CUGCCGCugacgcggaagcaccGUCGGAu -3'
miRNA:   3'- -CC-GGCCGG-CGGAcGACGGCG---------------CGGUCU- -5'
30530 5' -65.9 NC_006548.1 + 1123 0.66 0.167933
Target:  5'- aGCCuGGCCGUCUGCgcgGCCagcaaCGCCu-- -3'
miRNA:   3'- cCGG-CCGGCGGACGa--CGGc----GCGGucu -5'
30530 5' -65.9 NC_006548.1 + 36520 0.66 0.163579
Target:  5'- aGGCCccGGCCGauauCUGCUgagaucGUCGCGaCCGGGc -3'
miRNA:   3'- -CCGG--CCGGCg---GACGA------CGGCGC-GGUCU- -5'
30530 5' -65.9 NC_006548.1 + 36359 0.66 0.162293
Target:  5'- cGGCCguccGGCCugcagaugaacuacGCgCUGCUcaGCCGCGUgGGAu -3'
miRNA:   3'- -CCGG----CCGG--------------CG-GACGA--CGGCGCGgUCU- -5'
30530 5' -65.9 NC_006548.1 + 28958 0.67 0.159327
Target:  5'- cGCCGGCCGCCUcgacgGUuugGCCGgugGCCcGAa -3'
miRNA:   3'- cCGGCCGGCGGA-----CGa--CGGCg--CGGuCU- -5'
30530 5' -65.9 NC_006548.1 + 27076 0.67 0.154765
Target:  5'- uGCgGGCCGUCUGCUgaucggcggacucGCCGaCGCUg-- -3'
miRNA:   3'- cCGgCCGGCGGACGA-------------CGGC-GCGGucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.