miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30531 3' -57.2 NC_006548.1 + 6916 0.66 0.497611
Target:  5'- aUGCagGCGgUAgcugUGCAGCGCGcggcugaucGCGCu -3'
miRNA:   3'- -ACGagUGCgGUa---ACGUCGCGCu--------CGCG- -5'
30531 3' -57.2 NC_006548.1 + 29650 0.66 0.487066
Target:  5'- gUGC-CGCuGCCA--GCGGUGCcGGUGCg -3'
miRNA:   3'- -ACGaGUG-CGGUaaCGUCGCGcUCGCG- -5'
30531 3' -57.2 NC_006548.1 + 14086 0.66 0.487066
Target:  5'- aGCUCGCGgCGgaucuccaGCGGUGUG-GCGUc -3'
miRNA:   3'- aCGAGUGCgGUaa------CGUCGCGCuCGCG- -5'
30531 3' -57.2 NC_006548.1 + 25852 0.66 0.487066
Target:  5'- cUGCUaggcuCGCCcgUGCucaCGUGAGCGg -3'
miRNA:   3'- -ACGAgu---GCGGuaACGuc-GCGCUCGCg -5'
30531 3' -57.2 NC_006548.1 + 22681 0.66 0.487066
Target:  5'- aGUUC-CGCUuccgGCAGUucgGCGAGCGg -3'
miRNA:   3'- aCGAGuGCGGuaa-CGUCG---CGCUCGCg -5'
30531 3' -57.2 NC_006548.1 + 17518 0.66 0.47559
Target:  5'- cUGCgCACGCuCAUcgagcaggcaaGCAgcuuggaagaucuGCGCGAGCGCc -3'
miRNA:   3'- -ACGaGUGCG-GUAa----------CGU-------------CGCGCUCGCG- -5'
30531 3' -57.2 NC_006548.1 + 26301 0.66 0.456092
Target:  5'- cGCgccgCGCGCUuuuacuaccUGCAGCa-GAGCGCg -3'
miRNA:   3'- aCGa---GUGCGGua-------ACGUCGcgCUCGCG- -5'
30531 3' -57.2 NC_006548.1 + 25786 0.66 0.456092
Target:  5'- cGCUCACGUgA--GCAcGgGCGAGCcuaGCa -3'
miRNA:   3'- aCGAGUGCGgUaaCGU-CgCGCUCG---CG- -5'
30531 3' -57.2 NC_006548.1 + 14625 0.66 0.456092
Target:  5'- cGCUgACGCCA--GCAGUcCGA-CGCg -3'
miRNA:   3'- aCGAgUGCGGUaaCGUCGcGCUcGCG- -5'
30531 3' -57.2 NC_006548.1 + 22771 0.66 0.446004
Target:  5'- aGCaccuUCuGCGCCugaaugGCAGCGaCGAGCuGCu -3'
miRNA:   3'- aCG----AG-UGCGGuaa---CGUCGC-GCUCG-CG- -5'
30531 3' -57.2 NC_006548.1 + 34982 0.66 0.446004
Target:  5'- aGC-CACGCacgUGCGGagGCGAGCa- -3'
miRNA:   3'- aCGaGUGCGguaACGUCg-CGCUCGcg -5'
30531 3' -57.2 NC_006548.1 + 15013 0.67 0.425234
Target:  5'- cUGCUCAC-CCAUUGauccacucGCGCGGacucggcagcaguGCGCu -3'
miRNA:   3'- -ACGAGUGcGGUAACgu------CGCGCU-------------CGCG- -5'
30531 3' -57.2 NC_006548.1 + 3682 0.67 0.41651
Target:  5'- cGCUgaGCGCCGagGCGGUGaacuGGCGCu -3'
miRNA:   3'- aCGAg-UGCGGUaaCGUCGCgc--UCGCG- -5'
30531 3' -57.2 NC_006548.1 + 26402 0.67 0.41651
Target:  5'- aGCUCugGCCAUcgacccgGCcGC-CGAacGCGCu -3'
miRNA:   3'- aCGAGugCGGUAa------CGuCGcGCU--CGCG- -5'
30531 3' -57.2 NC_006548.1 + 16334 0.67 0.41651
Target:  5'- cUGCa-GCGCCGUgGCGGCaacgaccuGCGGGUGUa -3'
miRNA:   3'- -ACGagUGCGGUAaCGUCG--------CGCUCGCG- -5'
30531 3' -57.2 NC_006548.1 + 13376 0.67 0.397522
Target:  5'- gGCgCGCGCUccUGCGGCGgGcaaaccGGCGCc -3'
miRNA:   3'- aCGaGUGCGGuaACGUCGCgC------UCGCG- -5'
30531 3' -57.2 NC_006548.1 + 37408 0.67 0.397522
Target:  5'- gGC-CugGCCGcuagucgGCAGCGUGGcgacGCGCc -3'
miRNA:   3'- aCGaGugCGGUaa-----CGUCGCGCU----CGCG- -5'
30531 3' -57.2 NC_006548.1 + 23057 0.67 0.397522
Target:  5'- cUGCUCAguugcUGCCGUugggUGCaaucgAGCGgGAGCGg -3'
miRNA:   3'- -ACGAGU-----GCGGUA----ACG-----UCGCgCUCGCg -5'
30531 3' -57.2 NC_006548.1 + 16807 0.68 0.388239
Target:  5'- gGCUCAuCGUCGUUGuCGGCGCcGGuCGa -3'
miRNA:   3'- aCGAGU-GCGGUAAC-GUCGCGcUC-GCg -5'
30531 3' -57.2 NC_006548.1 + 27270 0.68 0.3791
Target:  5'- uUGCUCGguCGCCGccUGCuGGaCGCGAGCa- -3'
miRNA:   3'- -ACGAGU--GCGGUa-ACG-UC-GCGCUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.