miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30531 5' -57.1 NC_006548.1 + 18444 0.66 0.473927
Target:  5'- uGGCAGCGGCGuGGUcuucugcaGGGCGCCcUGg -3'
miRNA:   3'- cUUGUCGCCGU-CCGa-------CCUGCGGuAUa -5'
30531 5' -57.1 NC_006548.1 + 26352 0.67 0.384776
Target:  5'- aAGCGcGCGGCGcGCUGGAUGUCGg-- -3'
miRNA:   3'- cUUGU-CGCCGUcCGACCUGCGGUaua -5'
30531 5' -57.1 NC_006548.1 + 23225 0.67 0.384776
Target:  5'- uGGAUuGcCGGUAGaucGCUGGACGCCAg-- -3'
miRNA:   3'- -CUUGuC-GCCGUC---CGACCUGCGGUaua -5'
30531 5' -57.1 NC_006548.1 + 13421 0.67 0.366523
Target:  5'- aGAAcCGGCGGCGGGCcaGGuCGCUGUu- -3'
miRNA:   3'- -CUU-GUCGCCGUCCGa-CCuGCGGUAua -5'
30531 5' -57.1 NC_006548.1 + 18006 0.67 0.366523
Target:  5'- --cCAGCuauGC-GGCUGGACGCUAUGc -3'
miRNA:   3'- cuuGUCGc--CGuCCGACCUGCGGUAUa -5'
30531 5' -57.1 NC_006548.1 + 30679 0.68 0.356741
Target:  5'- cGACGGCGGaCAGGgUGGcaggaugaagcccGCGCCGg-- -3'
miRNA:   3'- cUUGUCGCC-GUCCgACC-------------UGCGGUaua -5'
30531 5' -57.1 NC_006548.1 + 16509 0.68 0.348875
Target:  5'- -uGCAGCGcGUGGGCUGGgaccGCGUCAc-- -3'
miRNA:   3'- cuUGUCGC-CGUCCGACC----UGCGGUaua -5'
30531 5' -57.1 NC_006548.1 + 3582 0.68 0.348875
Target:  5'- cAACuGGUGcCGGGCUGGugGCCGUu- -3'
miRNA:   3'- cUUG-UCGCcGUCCGACCugCGGUAua -5'
30531 5' -57.1 NC_006548.1 + 32468 0.69 0.315426
Target:  5'- cAACGGCGGCGacGGCUGccggccaggcuGAUGCCAUc- -3'
miRNA:   3'- cUUGUCGCCGU--CCGAC-----------CUGCGGUAua -5'
30531 5' -57.1 NC_006548.1 + 20582 0.69 0.291968
Target:  5'- cAGCGGCGGCagAGGCUGcugcggcgucGACGCCu--- -3'
miRNA:   3'- cUUGUCGCCG--UCCGAC----------CUGCGGuaua -5'
30531 5' -57.1 NC_006548.1 + 36433 0.69 0.284457
Target:  5'- uGAGCAGCGcguaguucaucuGCAGGCcGGACgGCCGc-- -3'
miRNA:   3'- -CUUGUCGC------------CGUCCGaCCUG-CGGUaua -5'
30531 5' -57.1 NC_006548.1 + 13662 0.7 0.254578
Target:  5'- uGAACAGCucuccuaccGGCUGGACGCCAUc- -3'
miRNA:   3'- -CUUGUCGccgu-----CCGACCUGCGGUAua -5'
30531 5' -57.1 NC_006548.1 + 35198 0.7 0.242582
Target:  5'- cGAgGGCGGCAucguugggccGCUGGACGUCAUGUu -3'
miRNA:   3'- cUUgUCGCCGUc---------CGACCUGCGGUAUA- -5'
30531 5' -57.1 NC_006548.1 + 21035 1.05 0.000595
Target:  5'- aGAACAGCGGCAGGCUGGACGCCAUAUc -3'
miRNA:   3'- -CUUGUCGCCGUCCGACCUGCGGUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.