miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30532 3' -56.2 NC_006548.1 + 27919 0.66 0.564156
Target:  5'- -cCAGCGcguucCCGGcgcGUUCUCGCUGCCGc -3'
miRNA:   3'- uaGUCGU-----GGCUu--UAAGGGCGGCGGCu -5'
30532 3' -56.2 NC_006548.1 + 14461 0.66 0.553056
Target:  5'- cUCGGUGCUGGcacgAAUUgCCGCCaGCCGc -3'
miRNA:   3'- uAGUCGUGGCU----UUAAgGGCGG-CGGCu -5'
30532 3' -56.2 NC_006548.1 + 33086 0.66 0.542022
Target:  5'- gGUCAGCGCCGGuugUUCCGUCaaCUGGg -3'
miRNA:   3'- -UAGUCGUGGCUuuaAGGGCGGc-GGCU- -5'
30532 3' -56.2 NC_006548.1 + 27979 0.66 0.531062
Target:  5'- cUCAGCgagugGCUGGAaaagggccugAUUCCgGCgGCCGAg -3'
miRNA:   3'- uAGUCG-----UGGCUU----------UAAGGgCGgCGGCU- -5'
30532 3' -56.2 NC_006548.1 + 28330 0.66 0.520184
Target:  5'- -gCGGCGCgCGugaacggUCCCGCCGgUGAu -3'
miRNA:   3'- uaGUCGUG-GCuuua---AGGGCGGCgGCU- -5'
30532 3' -56.2 NC_006548.1 + 22602 0.66 0.509395
Target:  5'- -aCGGCGCUaucg-UUCCGCuCGCCGAa -3'
miRNA:   3'- uaGUCGUGGcuuuaAGGGCG-GCGGCU- -5'
30532 3' -56.2 NC_006548.1 + 22651 0.67 0.4987
Target:  5'- gAUCGGUGCCGAucuggagaUCCaggaCGCCGCCa- -3'
miRNA:   3'- -UAGUCGUGGCUuua-----AGG----GCGGCGGcu -5'
30532 3' -56.2 NC_006548.1 + 27218 0.67 0.4987
Target:  5'- -gCGGCgACCGAGcaaCgCGCUGCCGAg -3'
miRNA:   3'- uaGUCG-UGGCUUuaaGgGCGGCGGCU- -5'
30532 3' -56.2 NC_006548.1 + 1365 0.67 0.497636
Target:  5'- cAUCuuGUAcCCGAcuuucucGAUcugCCCGCCGCCGGc -3'
miRNA:   3'- -UAGu-CGU-GGCU-------UUAa--GGGCGGCGGCU- -5'
30532 3' -56.2 NC_006548.1 + 23736 0.67 0.488107
Target:  5'- -cCAaCugCGAGAUUUCCGCaCGCCa- -3'
miRNA:   3'- uaGUcGugGCUUUAAGGGCG-GCGGcu -5'
30532 3' -56.2 NC_006548.1 + 32398 0.67 0.488107
Target:  5'- cAUCAGCcugGCCGGccagCCguCGCCGCCGu -3'
miRNA:   3'- -UAGUCG---UGGCUuuaaGG--GCGGCGGCu -5'
30532 3' -56.2 NC_006548.1 + 36242 0.67 0.47762
Target:  5'- --uGGaCugCGGAcgUCCCgGCUGCCGGc -3'
miRNA:   3'- uagUC-GugGCUUuaAGGG-CGGCGGCU- -5'
30532 3' -56.2 NC_006548.1 + 36638 0.67 0.467246
Target:  5'- -cCAGCGCCGcauGAggCCgGCgCGCUGAu -3'
miRNA:   3'- uaGUCGUGGCu--UUaaGGgCG-GCGGCU- -5'
30532 3' -56.2 NC_006548.1 + 27804 0.67 0.467246
Target:  5'- -cCAGCuCCGggGUUUCUuucgcgGCCGCCa- -3'
miRNA:   3'- uaGUCGuGGCuuUAAGGG------CGGCGGcu -5'
30532 3' -56.2 NC_006548.1 + 14649 0.67 0.446856
Target:  5'- cGUCAGCGuCgCGAuGUUCuUUGCCGCUGAc -3'
miRNA:   3'- -UAGUCGU-G-GCUuUAAG-GGCGGCGGCU- -5'
30532 3' -56.2 NC_006548.1 + 12079 0.68 0.436847
Target:  5'- gGUCGguGCGCUGAugcUCCUGCUGCUGGc -3'
miRNA:   3'- -UAGU--CGUGGCUuuaAGGGCGGCGGCU- -5'
30532 3' -56.2 NC_006548.1 + 32914 0.68 0.436847
Target:  5'- -cCAGCA-CGAAAaUCCCGCCaGCgGGu -3'
miRNA:   3'- uaGUCGUgGCUUUaAGGGCGG-CGgCU- -5'
30532 3' -56.2 NC_006548.1 + 33571 0.68 0.39815
Target:  5'- -gCGGCGgUGGAAgaCCUGcCCGCCGAa -3'
miRNA:   3'- uaGUCGUgGCUUUaaGGGC-GGCGGCU- -5'
30532 3' -56.2 NC_006548.1 + 12109 0.69 0.388824
Target:  5'- cUCGGCGCCGGAcgUUCaCGCUGgUGGu -3'
miRNA:   3'- uAGUCGUGGCUUuaAGG-GCGGCgGCU- -5'
30532 3' -56.2 NC_006548.1 + 33363 0.69 0.352984
Target:  5'- -gCAGCGCCGcaugcUCCuCGCgGCCGGa -3'
miRNA:   3'- uaGUCGUGGCuuua-AGG-GCGgCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.