miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30532 5' -54.4 NC_006548.1 + 3559 0.66 0.719136
Target:  5'- gUUCGA-GUCAUCCugGUggaaacCCaGCCUGGa -3'
miRNA:   3'- gAAGCUgCAGUAGG--CAa-----GGcCGGACC- -5'
30532 5' -54.4 NC_006548.1 + 2376 0.66 0.708257
Target:  5'- --cCGGCGguuuucCAUCCGagCCGG-CUGGa -3'
miRNA:   3'- gaaGCUGCa-----GUAGGCaaGGCCgGACC- -5'
30532 5' -54.4 NC_006548.1 + 24707 0.66 0.708257
Target:  5'- -aUCGA-GUCG-CCaacgUCCGGCCUGa -3'
miRNA:   3'- gaAGCUgCAGUaGGca--AGGCCGGACc -5'
30532 5' -54.4 NC_006548.1 + 31624 0.66 0.675207
Target:  5'- gUUCGAUGUCAgCa--UCUGGCCUGc -3'
miRNA:   3'- gAAGCUGCAGUaGgcaAGGCCGGACc -5'
30532 5' -54.4 NC_006548.1 + 35959 0.67 0.652943
Target:  5'- cCUUCGucguCGUUAUCaCGccgCCGGCCgcgcGGa -3'
miRNA:   3'- -GAAGCu---GCAGUAG-GCaa-GGCCGGa---CC- -5'
30532 5' -54.4 NC_006548.1 + 7784 0.67 0.619426
Target:  5'- -cUCGAUGUCGUCUaggUCgaGGCCUGc -3'
miRNA:   3'- gaAGCUGCAGUAGGca-AGg-CCGGACc -5'
30532 5' -54.4 NC_006548.1 + 5657 0.67 0.619426
Target:  5'- -cUCGACGcCAUCgccaaccaGUUgcgcaagccggcCCGGCCUGGc -3'
miRNA:   3'- gaAGCUGCaGUAGg-------CAA------------GGCCGGACC- -5'
30532 5' -54.4 NC_006548.1 + 16071 0.68 0.58601
Target:  5'- --cUGGCGaucCAUgCUGcUUCCGGCCUGGu -3'
miRNA:   3'- gaaGCUGCa--GUA-GGC-AAGGCCGGACC- -5'
30532 5' -54.4 NC_006548.1 + 13430 0.68 0.563915
Target:  5'- -cUCGGCGUCAgaaCCGgcggCgGGCCaGGu -3'
miRNA:   3'- gaAGCUGCAGUa--GGCaa--GgCCGGaCC- -5'
30532 5' -54.4 NC_006548.1 + 15461 0.7 0.438062
Target:  5'- aCUUCGACuUCAUCCGggCgGGCUg-- -3'
miRNA:   3'- -GAAGCUGcAGUAGGCaaGgCCGGacc -5'
30532 5' -54.4 NC_006548.1 + 17709 0.71 0.418639
Target:  5'- uCUUCcugGACGUCAUUacgUCCGGCCaGGu -3'
miRNA:   3'- -GAAG---CUGCAGUAGgcaAGGCCGGaCC- -5'
30532 5' -54.4 NC_006548.1 + 8331 0.71 0.399749
Target:  5'- --cUGACGUgAUCCGcaUgGGCCUGGg -3'
miRNA:   3'- gaaGCUGCAgUAGGCaaGgCCGGACC- -5'
30532 5' -54.4 NC_006548.1 + 17450 0.75 0.236364
Target:  5'- ---aGGCGUCGgcgCCGUggccUCGGCCUGGg -3'
miRNA:   3'- gaagCUGCAGUa--GGCAa---GGCCGGACC- -5'
30532 5' -54.4 NC_006548.1 + 21274 1.1 0.000891
Target:  5'- uCUUCGACGUCAUCCGUUCCGGCCUGGc -3'
miRNA:   3'- -GAAGCUGCAGUAGGCAAGGCCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.