miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30533 5' -56.3 NC_006548.1 + 16861 0.66 0.582151
Target:  5'- cGGuauGCCCacggcGGUCGGCCGCuaugacgacAAGaCCGc -3'
miRNA:   3'- -CCuu-UGGGa----CCAGCCGGCG---------UUCaGGU- -5'
30533 5' -56.3 NC_006548.1 + 33310 0.66 0.57108
Target:  5'- gGGAAGCCaacccccgcCUGGUCGGCaaauuGCGgcAGcCCGg -3'
miRNA:   3'- -CCUUUGG---------GACCAGCCGg----CGU--UCaGGU- -5'
30533 5' -56.3 NC_006548.1 + 35586 0.66 0.56006
Target:  5'- --uGACgCCUGGUCcagcaGGCCGCGA-UCCu -3'
miRNA:   3'- ccuUUG-GGACCAG-----CCGGCGUUcAGGu -5'
30533 5' -56.3 NC_006548.1 + 6588 0.66 0.538209
Target:  5'- -uGGACCCUGGuUCGGCCaacaucucgGCGAuGUCgAa -3'
miRNA:   3'- ccUUUGGGACC-AGCCGG---------CGUU-CAGgU- -5'
30533 5' -56.3 NC_006548.1 + 17888 0.67 0.515588
Target:  5'- cGGcauGACCCUGG-CGGaguuCCGCAaggacuacgacgcGGUCCu -3'
miRNA:   3'- -CCu--UUGGGACCaGCC----GGCGU-------------UCAGGu -5'
30533 5' -56.3 NC_006548.1 + 7621 0.68 0.464434
Target:  5'- ---cGCgCUGGUCGGCCGUcauGGuuUCCAc -3'
miRNA:   3'- ccuuUGgGACCAGCCGGCGu--UC--AGGU- -5'
30533 5' -56.3 NC_006548.1 + 18508 0.69 0.387083
Target:  5'- --uGACCC-GGUCcgucguGGCCGCcGGGUCCAu -3'
miRNA:   3'- ccuUUGGGaCCAG------CCGGCG-UUCAGGU- -5'
30533 5' -56.3 NC_006548.1 + 13085 0.69 0.384351
Target:  5'- aGGAcGCCCUGGUCcaguacaagcagcaGGUCGCGcGcgCCAa -3'
miRNA:   3'- -CCUuUGGGACCAG--------------CCGGCGUuCa-GGU- -5'
30533 5' -56.3 NC_006548.1 + 30520 0.7 0.343245
Target:  5'- uGGAAccagccgauGCCCuacUGGUucuucgccaaCGGCCGCAGGUUCu -3'
miRNA:   3'- -CCUU---------UGGG---ACCA----------GCCGGCGUUCAGGu -5'
30533 5' -56.3 NC_006548.1 + 29241 0.7 0.342405
Target:  5'- cGAGGCacaaguugcucuaCCUGGUCGGCgguagaccgaUGCAGGUCUAg -3'
miRNA:   3'- cCUUUG-------------GGACCAGCCG----------GCGUUCAGGU- -5'
30533 5' -56.3 NC_006548.1 + 19078 0.71 0.310829
Target:  5'- uGGguGCCCUGG-CGGCCGgGAaaucgCCAg -3'
miRNA:   3'- -CCuuUGGGACCaGCCGGCgUUca---GGU- -5'
30533 5' -56.3 NC_006548.1 + 21690 0.73 0.233854
Target:  5'- uGAAGCCCUGGgcgaGGUCGUAcuUCCAg -3'
miRNA:   3'- cCUUUGGGACCag--CCGGCGUucAGGU- -5'
30533 5' -56.3 NC_006548.1 + 9843 0.76 0.138804
Target:  5'- cGGAAGCguugcuucaCCUGGUCGGCCGUGAGggCUu -3'
miRNA:   3'- -CCUUUG---------GGACCAGCCGGCGUUCa-GGu -5'
30533 5' -56.3 NC_006548.1 + 21660 1.11 0.000361
Target:  5'- cGGAAACCCUGGUCGGCCGCAAGUCCAa -3'
miRNA:   3'- -CCUUUGGGACCAGCCGGCGUUCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.