miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30534 5' -56.8 NC_006548.1 + 21231 0.66 0.547176
Target:  5'- -cUGAUCgGcAUCAGCAccgaaauuCCCGCcGCCg -3'
miRNA:   3'- ucACUAGgC-UGGUCGUu-------GGGCGaCGG- -5'
30534 5' -56.8 NC_006548.1 + 6996 0.66 0.547175
Target:  5'- --cGAUCagcgCGAUCAGCcGCgCGCUGCa -3'
miRNA:   3'- ucaCUAG----GCUGGUCGuUGgGCGACGg -5'
30534 5' -56.8 NC_006548.1 + 30568 0.66 0.547175
Target:  5'- cGGcUGGUUCcauGCCAGCAguugcACCCGCggGCUg -3'
miRNA:   3'- -UC-ACUAGGc--UGGUCGU-----UGGGCGa-CGG- -5'
30534 5' -56.8 NC_006548.1 + 25320 0.66 0.547175
Target:  5'- -aUGAUCCGAuCCAGCGG-CgGCaaGCCu -3'
miRNA:   3'- ucACUAGGCU-GGUCGUUgGgCGa-CGG- -5'
30534 5' -56.8 NC_006548.1 + 36971 0.66 0.547175
Target:  5'- cAGuUGAU-CGGCCugcAGCAGCCgGUUGCg -3'
miRNA:   3'- -UC-ACUAgGCUGG---UCGUUGGgCGACGg -5'
30534 5' -56.8 NC_006548.1 + 29758 0.66 0.546084
Target:  5'- uGGUGAUcgaggacagccagCCGccacuACCGGCAGCCgcacCUGCCg -3'
miRNA:   3'- -UCACUA-------------GGC-----UGGUCGUUGGgc--GACGG- -5'
30534 5' -56.8 NC_006548.1 + 17437 0.66 0.536289
Target:  5'- cAGccGUCCGAcCCAGCAGCggcgauggcgCCGCagcugGCCg -3'
miRNA:   3'- -UCacUAGGCU-GGUCGUUG----------GGCGa----CGG- -5'
30534 5' -56.8 NC_006548.1 + 19315 0.66 0.535204
Target:  5'- -uUGcgCCGcagguagGCCGGCGACaaggGCUGCCa -3'
miRNA:   3'- ucACuaGGC-------UGGUCGUUGgg--CGACGG- -5'
30534 5' -56.8 NC_006548.1 + 32255 0.66 0.525478
Target:  5'- gAGUGAaugacgucaaCCGGCUGGUGugCCGCauagcUGCCa -3'
miRNA:   3'- -UCACUa---------GGCUGGUCGUugGGCG-----ACGG- -5'
30534 5' -56.8 NC_006548.1 + 9301 0.66 0.525478
Target:  5'- cGUGAUCaauCGACaGGCGACgCGCaagaGCCa -3'
miRNA:   3'- uCACUAG---GCUGgUCGUUGgGCGa---CGG- -5'
30534 5' -56.8 NC_006548.1 + 7676 0.66 0.525478
Target:  5'- -aUGAcggCCGACCAGCGcgcgGCagaGCUGCg -3'
miRNA:   3'- ucACUa--GGCUGGUCGU----UGgg-CGACGg -5'
30534 5' -56.8 NC_006548.1 + 28147 0.66 0.514751
Target:  5'- cGGuUGAgUUCGGCCuGCAGgCCGCcaGCCg -3'
miRNA:   3'- -UC-ACU-AGGCUGGuCGUUgGGCGa-CGG- -5'
30534 5' -56.8 NC_006548.1 + 36359 0.66 0.514751
Target:  5'- cGGccGUCCGGCCuGCAgaugaacuACgCGCUGCUc -3'
miRNA:   3'- -UCacUAGGCUGGuCGU--------UGgGCGACGG- -5'
30534 5' -56.8 NC_006548.1 + 23523 0.66 0.514751
Target:  5'- ----cUCgGGCCGGaUGACCCGCUGaCCc -3'
miRNA:   3'- ucacuAGgCUGGUC-GUUGGGCGAC-GG- -5'
30534 5' -56.8 NC_006548.1 + 13643 0.66 0.504114
Target:  5'- --gGAUCUgguuGAgCAGCAGCuuGCcGCCg -3'
miRNA:   3'- ucaCUAGG----CUgGUCGUUGggCGaCGG- -5'
30534 5' -56.8 NC_006548.1 + 20978 0.66 0.504114
Target:  5'- uGGgcaGUUCGGCCAGCAAgCUGCgcagcaccucgGCCg -3'
miRNA:   3'- -UCac-UAGGCUGGUCGUUgGGCGa----------CGG- -5'
30534 5' -56.8 NC_006548.1 + 7594 0.66 0.504114
Target:  5'- aGGUGAcuUCCuGACgCAGCucuGCCgCGCgcuggucgGCCg -3'
miRNA:   3'- -UCACU--AGG-CUG-GUCGu--UGG-GCGa-------CGG- -5'
30534 5' -56.8 NC_006548.1 + 32982 0.66 0.493573
Target:  5'- -cUGG-CCGGCCGGCu-CCCGCuUGUa -3'
miRNA:   3'- ucACUaGGCUGGUCGuuGGGCG-ACGg -5'
30534 5' -56.8 NC_006548.1 + 22008 0.66 0.493573
Target:  5'- cGGUGAUC--ACCGGCAGCggGUUGCUg -3'
miRNA:   3'- -UCACUAGgcUGGUCGUUGggCGACGG- -5'
30534 5' -56.8 NC_006548.1 + 35145 0.67 0.483134
Target:  5'- -uUGAUCuCGACCAGCucauccaacGGCCCcCUGgCa -3'
miRNA:   3'- ucACUAG-GCUGGUCG---------UUGGGcGACgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.