miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30537 3' -47.5 NC_006548.1 + 36263 0.66 0.946654
Target:  5'- gGCgGGGUCCAGUucGGCGGCu-GGACu- -3'
miRNA:   3'- gCG-UUUAGGUCA--UUGCUGuuCCUGuu -5'
30537 3' -47.5 NC_006548.1 + 17560 0.67 0.929158
Target:  5'- gCGCAGuugggucGUCCAGUugccGACGACAGGcuGCAu -3'
miRNA:   3'- -GCGUU-------UAGGUCA----UUGCUGUUCc-UGUu -5'
30537 3' -47.5 NC_006548.1 + 19310 0.67 0.923482
Target:  5'- cCGCAGGUaggCCG---GCGACAAGGGCu- -3'
miRNA:   3'- -GCGUUUA---GGUcauUGCUGUUCCUGuu -5'
30537 3' -47.5 NC_006548.1 + 30450 0.68 0.87884
Target:  5'- gGCGAucccgcCCGGUGGCGAUuucuGGACAGc -3'
miRNA:   3'- gCGUUua----GGUCAUUGCUGuu--CCUGUU- -5'
30537 3' -47.5 NC_006548.1 + 20542 0.68 0.87884
Target:  5'- uGCGGGUUCGGagAACGACGccuGGGCAc -3'
miRNA:   3'- gCGUUUAGGUCa-UUGCUGUu--CCUGUu -5'
30537 3' -47.5 NC_006548.1 + 25355 0.7 0.813113
Target:  5'- gCGCGA--CCAGcgaauggugGGCGGCAAGGACGc -3'
miRNA:   3'- -GCGUUuaGGUCa--------UUGCUGUUCCUGUu -5'
30537 3' -47.5 NC_006548.1 + 13766 0.7 0.79209
Target:  5'- uGCcGAUCCAGUAcguccGCcGCGAGGACu- -3'
miRNA:   3'- gCGuUUAGGUCAU-----UGcUGUUCCUGuu -5'
30537 3' -47.5 NC_006548.1 + 26948 0.7 0.79209
Target:  5'- gGCucuGUCCAGgacguaGGCGACAAGGcCGAg -3'
miRNA:   3'- gCGuu-UAGGUCa-----UUGCUGUUCCuGUU- -5'
30537 3' -47.5 NC_006548.1 + 2686 0.7 0.78127
Target:  5'- uGCGuAUCCAGgaGCGGguCGGGGACAc -3'
miRNA:   3'- gCGUuUAGGUCauUGCU--GUUCCUGUu -5'
30537 3' -47.5 NC_006548.1 + 33870 0.71 0.770264
Target:  5'- gCGCGcggCCGGUGAgCGACGAuGGACGg -3'
miRNA:   3'- -GCGUuuaGGUCAUU-GCUGUU-CCUGUu -5'
30537 3' -47.5 NC_006548.1 + 12838 0.72 0.712962
Target:  5'- gGUAAGUCCGGUGugG-CucGGGCGAa -3'
miRNA:   3'- gCGUUUAGGUCAUugCuGuuCCUGUU- -5'
30537 3' -47.5 NC_006548.1 + 33247 0.74 0.55714
Target:  5'- aGCAGccgCUGGU-ACGACAGGGACAAg -3'
miRNA:   3'- gCGUUua-GGUCAuUGCUGUUCCUGUU- -5'
30537 3' -47.5 NC_006548.1 + 28498 0.77 0.433112
Target:  5'- gCGCAGAUCCAGcAAUGGCA-GGACc- -3'
miRNA:   3'- -GCGUUUAGGUCaUUGCUGUuCCUGuu -5'
30537 3' -47.5 NC_006548.1 + 22480 1.08 0.004539
Target:  5'- cCGCAAAUCCAGUAACGACAAGGACAAa -3'
miRNA:   3'- -GCGUUUAGGUCAUUGCUGUUCCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.