miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30537 5' -59 NC_006548.1 + 5041 0.66 0.413984
Target:  5'- cGgUGCACCAgAUCGCggcgcaggguggauuUACCGGCGC-Cg -3'
miRNA:   3'- aCgGCGUGGU-UGGUG---------------AUGGCCGCGuG- -5'
30537 5' -59 NC_006548.1 + 16423 0.66 0.411148
Target:  5'- gGCCGUAgUCAGCCGCgaguggaagguggaaGCCGGCGg-- -3'
miRNA:   3'- aCGGCGU-GGUUGGUGa--------------UGGCCGCgug -5'
30537 5' -59 NC_006548.1 + 28537 0.66 0.410205
Target:  5'- cUGCUcgGCGCCGGCCAgguCgCGGCGCuACc -3'
miRNA:   3'- -ACGG--CGUGGUUGGUgauG-GCCGCG-UG- -5'
30537 5' -59 NC_006548.1 + 32184 0.66 0.410205
Target:  5'- aUGCgGCacACCAGCCGgUugacgucauucACuCGGCGUACu -3'
miRNA:   3'- -ACGgCG--UGGUUGGUgA-----------UG-GCCGCGUG- -5'
30537 5' -59 NC_006548.1 + 22953 0.66 0.410205
Target:  5'- gGCCGCcgGCCucaagGACCGCUucAUCGuGCaGCGCg -3'
miRNA:   3'- aCGGCG--UGG-----UUGGUGA--UGGC-CG-CGUG- -5'
30537 5' -59 NC_006548.1 + 37972 0.66 0.410205
Target:  5'- -uCCGCauGCCAACCGCU-UCGGgauUGCGCg -3'
miRNA:   3'- acGGCG--UGGUUGGUGAuGGCC---GCGUG- -5'
30537 5' -59 NC_006548.1 + 12228 0.66 0.410205
Target:  5'- cGCCGCucgaACCAGCacgcggcgaUACUGCuCGGCGgccCGCg -3'
miRNA:   3'- aCGGCG----UGGUUG---------GUGAUG-GCCGC---GUG- -5'
30537 5' -59 NC_006548.1 + 17202 0.66 0.409263
Target:  5'- gGcCCGUugGCUGACCgaguggaACUuccCCGGCGCGCa -3'
miRNA:   3'- aC-GGCG--UGGUUGG-------UGAu--GGCCGCGUG- -5'
30537 5' -59 NC_006548.1 + 2439 0.66 0.404576
Target:  5'- aGCCGgcucggauggaaaacCGCCGGCCug-GCgGGUGCGCc -3'
miRNA:   3'- aCGGC---------------GUGGUUGGugaUGgCCGCGUG- -5'
30537 5' -59 NC_006548.1 + 3596 0.66 0.400851
Target:  5'- aGCCGUGCCugaCGCaACUGGUGC-Cg -3'
miRNA:   3'- aCGGCGUGGuugGUGaUGGCCGCGuG- -5'
30537 5' -59 NC_006548.1 + 1068 0.66 0.400851
Target:  5'- aUGUCGa--CGACC-CaGCCGGCGCAg -3'
miRNA:   3'- -ACGGCgugGUUGGuGaUGGCCGCGUg -5'
30537 5' -59 NC_006548.1 + 36056 0.66 0.400851
Target:  5'- aGCCGCACCuggaGCUugCGGauaGC-Cg -3'
miRNA:   3'- aCGGCGUGGuuggUGAugGCCg--CGuG- -5'
30537 5' -59 NC_006548.1 + 33144 0.66 0.400851
Target:  5'- cGCUGCuguCCAucacgaggaACCGC-GCCuGCGCGCu -3'
miRNA:   3'- aCGGCGu--GGU---------UGGUGaUGGcCGCGUG- -5'
30537 5' -59 NC_006548.1 + 28850 0.66 0.400851
Target:  5'- cUGCCGCAuCCAgggucGCC-CaGgCGGCGCGa -3'
miRNA:   3'- -ACGGCGU-GGU-----UGGuGaUgGCCGCGUg -5'
30537 5' -59 NC_006548.1 + 6997 0.66 0.391635
Target:  5'- -uCCGCACgGAUCAagccGCUGGCGCGa -3'
miRNA:   3'- acGGCGUGgUUGGUga--UGGCCGCGUg -5'
30537 5' -59 NC_006548.1 + 11678 0.66 0.391635
Target:  5'- cGCCGCAaccCCGgcGCCGCcGCgCGcCGCGCa -3'
miRNA:   3'- aCGGCGU---GGU--UGGUGaUG-GCcGCGUG- -5'
30537 5' -59 NC_006548.1 + 28605 0.66 0.391635
Target:  5'- gGuaGCGCCGcgACCug-GCCGGCGC-Cg -3'
miRNA:   3'- aCggCGUGGU--UGGugaUGGCCGCGuG- -5'
30537 5' -59 NC_006548.1 + 36589 0.66 0.391635
Target:  5'- cGCCGCgGCCGgcACCGCggUGCUcGCGCGg -3'
miRNA:   3'- aCGGCG-UGGU--UGGUG--AUGGcCGCGUg -5'
30537 5' -59 NC_006548.1 + 6607 0.66 0.389808
Target:  5'- gGCCucgaucaGCACCGugcagaaguucucGCCACUcUCGGCGCcCa -3'
miRNA:   3'- aCGG-------CGUGGU-------------UGGUGAuGGCCGCGuG- -5'
30537 5' -59 NC_006548.1 + 16710 0.66 0.388897
Target:  5'- aGCCGUGCCcugcGCCuuACUucuggcauuucucgACCGGCGC-Cg -3'
miRNA:   3'- aCGGCGUGGu---UGG--UGA--------------UGGCCGCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.