miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30538 5' -56.3 NC_006548.1 + 8338 0.66 0.565284
Target:  5'- -cCGCCGGgucGCUGCCGGcuccaugaucuGAGgGGAu-- -3'
miRNA:   3'- gaGCGGCU---UGACGGCC-----------UUCgCCUuga -5'
30538 5' -56.3 NC_006548.1 + 10282 0.66 0.554272
Target:  5'- uUCGCUGuuAACUGgCGGAAGUaGGAGa- -3'
miRNA:   3'- gAGCGGC--UUGACgGCCUUCG-CCUUga -5'
30538 5' -56.3 NC_006548.1 + 29320 0.66 0.554272
Target:  5'- aUUGUCGAGCUGCU---GGCGGAGa- -3'
miRNA:   3'- gAGCGGCUUGACGGccuUCGCCUUga -5'
30538 5' -56.3 NC_006548.1 + 3683 0.66 0.532448
Target:  5'- -aCGCUGAGC-GCCG-AGGCGGugAACUg -3'
miRNA:   3'- gaGCGGCUUGaCGGCcUUCGCC--UUGA- -5'
30538 5' -56.3 NC_006548.1 + 3896 0.66 0.532448
Target:  5'- aUCGCCGGccacuucuccaaGCUGCau---GCGGAGCUg -3'
miRNA:   3'- gAGCGGCU------------UGACGgccuuCGCCUUGA- -5'
30538 5' -56.3 NC_006548.1 + 27263 0.67 0.51094
Target:  5'- gUCGCCGc-CUGCUGGAcGC-GAGCa -3'
miRNA:   3'- gAGCGGCuuGACGGCCUuCGcCUUGa -5'
30538 5' -56.3 NC_006548.1 + 21234 0.67 0.500322
Target:  5'- -cCGuCCGAGCUGCCauGGAucacgauacGGCGGGcgGCg -3'
miRNA:   3'- gaGC-GGCUUGACGG--CCU---------UCGCCU--UGa -5'
30538 5' -56.3 NC_006548.1 + 20925 0.67 0.489802
Target:  5'- gCUgGCCGAACUGCCcaaacAGGUGGAc-- -3'
miRNA:   3'- -GAgCGGCUUGACGGcc---UUCGCCUuga -5'
30538 5' -56.3 NC_006548.1 + 21467 0.67 0.489802
Target:  5'- --gGCCGuuCUGCCGGuAGCcugaaGGAGCg -3'
miRNA:   3'- gagCGGCuuGACGGCCuUCG-----CCUUGa -5'
30538 5' -56.3 NC_006548.1 + 20037 0.67 0.489802
Target:  5'- cCUCGCUGAGC-GCCGGAucguaggucGCGGcGAUc -3'
miRNA:   3'- -GAGCGGCUUGaCGGCCUu--------CGCC-UUGa -5'
30538 5' -56.3 NC_006548.1 + 2321 0.67 0.489802
Target:  5'- uUCGUCG-GCUGCgCGGcGGCgccGGAGCUg -3'
miRNA:   3'- gAGCGGCuUGACG-GCCuUCG---CCUUGA- -5'
30538 5' -56.3 NC_006548.1 + 12153 0.67 0.469081
Target:  5'- -cCGCCGAGCaguaucgccgcgUGCUGGuucGAGCGGcGCa -3'
miRNA:   3'- gaGCGGCUUG------------ACGGCC---UUCGCCuUGa -5'
30538 5' -56.3 NC_006548.1 + 14566 0.68 0.45889
Target:  5'- -gCGUCGGACUGCUGGcgucAGCGGcaaagAACa -3'
miRNA:   3'- gaGCGGCUUGACGGCCu---UCGCC-----UUGa -5'
30538 5' -56.3 NC_006548.1 + 20729 0.68 0.45889
Target:  5'- gCUCGUCGAGCUGgCGuuGGCgcuccuGGAGCg -3'
miRNA:   3'- -GAGCGGCUUGACgGCcuUCG------CCUUGa -5'
30538 5' -56.3 NC_006548.1 + 28026 0.68 0.413608
Target:  5'- aCUCGCUGAGCUGCUuuguguuggugcccaGGGccuuGGCGGcaAGCg -3'
miRNA:   3'- -GAGCGGCUUGACGG---------------CCU----UCGCC--UUGa -5'
30538 5' -56.3 NC_006548.1 + 8269 0.69 0.381962
Target:  5'- -cCGCaguaGAGCUGCCGGAAcUGGAuaGCg -3'
miRNA:   3'- gaGCGg---CUUGACGGCCUUcGCCU--UGa -5'
30538 5' -56.3 NC_006548.1 + 29665 0.69 0.381056
Target:  5'- -gUGCCGGugcggcaggugcgGCUGCCGGuaguGGCGGcuGGCUg -3'
miRNA:   3'- gaGCGGCU-------------UGACGGCCu---UCGCC--UUGA- -5'
30538 5' -56.3 NC_006548.1 + 4566 0.69 0.355411
Target:  5'- gCUUGCC-AGCccgGCC-GAAGCGGAACUc -3'
miRNA:   3'- -GAGCGGcUUGa--CGGcCUUCGCCUUGA- -5'
30538 5' -56.3 NC_006548.1 + 432 0.7 0.346854
Target:  5'- gCUCGCUGAGCaUGuuguuCCGGcGGCGGAucuGCUg -3'
miRNA:   3'- -GAGCGGCUUG-AC-----GGCCuUCGCCU---UGA- -5'
30538 5' -56.3 NC_006548.1 + 9830 0.7 0.314117
Target:  5'- uUUGCCGGcCUGgCGGAAGCGuuGCUu -3'
miRNA:   3'- gAGCGGCUuGACgGCCUUCGCcuUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.