Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30539 | 3' | -54.7 | NC_006548.1 | + | 23496 | 1.11 | 0.000474 |
Target: 5'- cAGCUCAUCGCCGAGGGCAAGUUCAGCc -3' miRNA: 3'- -UCGAGUAGCGGCUCCCGUUCAAGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 14499 | 0.76 | 0.154629 |
Target: 5'- cAGgUCGUCGCCGccuGGGCAcGGaUCAGCu -3' miRNA: 3'- -UCgAGUAGCGGCu--CCCGU-UCaAGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 17419 | 0.74 | 0.210533 |
Target: 5'- gAGU---UCGCCGAGGGCGA--UCAGCc -3' miRNA: 3'- -UCGaguAGCGGCUCCCGUUcaAGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 34911 | 0.73 | 0.254583 |
Target: 5'- cGGUUCGUUGCCGAGGGaauc--CGGCa -3' miRNA: 3'- -UCGAGUAGCGGCUCCCguucaaGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 35569 | 0.72 | 0.305921 |
Target: 5'- cGUUguUCGCCGAGGGCuuuGGUcUguGCc -3' miRNA: 3'- uCGAguAGCGGCUCCCGu--UCA-AguCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 18221 | 0.71 | 0.347224 |
Target: 5'- gAGCUggCAUCGCU--GGGCAAGgaCGGCc -3' miRNA: 3'- -UCGA--GUAGCGGcuCCCGUUCaaGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 12335 | 0.71 | 0.355949 |
Target: 5'- aGGCcCugugCGCCGAcGGGCGAGcgggcaUCAGCa -3' miRNA: 3'- -UCGaGua--GCGGCU-CCCGUUCa-----AGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 12408 | 0.7 | 0.373857 |
Target: 5'- cGGCUgGUuggUGCCGAGGGCGgccggauacAGgcCGGCg -3' miRNA: 3'- -UCGAgUA---GCGGCUCCCGU---------UCaaGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 17612 | 0.69 | 0.431121 |
Target: 5'- aGGC-CAUgGCCGAgGGGCuGGaggCAGCu -3' miRNA: 3'- -UCGaGUAgCGGCU-CCCGuUCaa-GUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 8207 | 0.69 | 0.441155 |
Target: 5'- gAGCaCAgUGCCGAGgucauGGCGcAGUUCGGCg -3' miRNA: 3'- -UCGaGUaGCGGCUC-----CCGU-UCAAGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 36806 | 0.69 | 0.461612 |
Target: 5'- uGCgagCGUCGCCGAGcuGGUGcGGcUCAGCa -3' miRNA: 3'- uCGa--GUAGCGGCUC--CCGU-UCaAGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 20866 | 0.68 | 0.503954 |
Target: 5'- gAGU---UCGCCGAGGGCGA---CGGCc -3' miRNA: 3'- -UCGaguAGCGGCUCCCGUUcaaGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 22128 | 0.68 | 0.503954 |
Target: 5'- -cCUCGUCGCCGAGGGagccGUUauauGCc -3' miRNA: 3'- ucGAGUAGCGGCUCCCguu-CAAgu--CG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 120 | 0.67 | 0.546777 |
Target: 5'- cGGCUCAUUcgGCCGGGucaaaaaGGCccaacugaucGGUUCGGCg -3' miRNA: 3'- -UCGAGUAG--CGGCUC-------CCGu---------UCAAGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 13362 | 0.67 | 0.546777 |
Target: 5'- cGGCgggCAaaccggCGCCGAGGGCGGuGUUgaagucgcgcaccCAGCc -3' miRNA: 3'- -UCGa--GUa-----GCGGCUCCCGUU-CAA-------------GUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 8001 | 0.67 | 0.559074 |
Target: 5'- gAGUgaaGUCGCCGuGGGGCucaugcucuUUCAGCa -3' miRNA: 3'- -UCGag-UAGCGGC-UCCCGuuc------AAGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 22902 | 0.67 | 0.559074 |
Target: 5'- uGGCgauucaGUCGCgCGGcGGCGAGUUgGGCc -3' miRNA: 3'- -UCGag----UAGCG-GCUcCCGUUCAAgUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 25638 | 0.66 | 0.592963 |
Target: 5'- uGGCau-UCGCCGGGGGaGAGga-AGCa -3' miRNA: 3'- -UCGaguAGCGGCUCCCgUUCaagUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 32742 | 0.66 | 0.604343 |
Target: 5'- cGGCUUcgaaugaaCGCCGGGGuGaCAGGcgCAGCg -3' miRNA: 3'- -UCGAGua------GCGGCUCC-C-GUUCaaGUCG- -5' |
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30539 | 3' | -54.7 | NC_006548.1 | + | 28779 | 0.66 | 0.615749 |
Target: 5'- uGCUCG-CGCCGccuGGGCGAcccuGgaugCGGCa -3' miRNA: 3'- uCGAGUaGCGGCu--CCCGUU----Caa--GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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