miRNA display CGI

Results 21 - 25 of 25 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30539	3'	-54.7	NC_006548.1	+	35569	0.72	0.305921
	Target:  5'- cGUUguUCGCCGAGGGCuuuGGUcUguGCc -3' miRNA:   3'- uCGAguAGCGGCUCCCGu--UCA-AguCG- -5'
30539	3'	-54.7	NC_006548.1	+	34911	0.73	0.254583
	Target:  5'- cGGUUCGUUGCCGAGGGaauc--CGGCa -3' miRNA:   3'- -UCGAGUAGCGGCUCCCguucaaGUCG- -5'
30539	3'	-54.7	NC_006548.1	+	17419	0.74	0.210533
	Target:  5'- gAGU---UCGCCGAGGGCGA--UCAGCc -3' miRNA:   3'- -UCGaguAGCGGCUCCCGUUcaAGUCG- -5'
30539	3'	-54.7	NC_006548.1	+	14499	0.76	0.154629
	Target:  5'- cAGgUCGUCGCCGccuGGGCAcGGaUCAGCu -3' miRNA:   3'- -UCgAGUAGCGGCu--CCCGU-UCaAGUCG- -5'
30539	3'	-54.7	NC_006548.1	+	23496	1.11	0.000474
	Target:  5'- cAGCUCAUCGCCGAGGGCAAGUUCAGCc -3' miRNA:   3'- -UCGAGUAGCGGCUCCCGUUCAAGUCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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