Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30541 | 3' | -55.5 | NC_006548.1 | + | 22017 | 0.66 | 0.642017 |
Target: 5'- cCGUcGCACcgccaccauccUUCGCCGUCACCcgaagaUCGUGa -3' miRNA: 3'- -GCA-CGUG-----------AAGCGGUAGUGGc-----AGCGCc -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 27527 | 0.66 | 0.630888 |
Target: 5'- -cUGCugUUCGCCGgcaUCGCCgGUUaCGGc -3' miRNA: 3'- gcACGugAAGCGGU---AGUGG-CAGcGCC- -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 16245 | 0.66 | 0.61976 |
Target: 5'- cCGcGCACcgCGCCGaaGCCGU-GCGGc -3' miRNA: 3'- -GCaCGUGaaGCGGUagUGGCAgCGCC- -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 17511 | 0.67 | 0.586482 |
Target: 5'- --aGCuGCggCGCCAUCGCCGcUGCuGGg -3' miRNA: 3'- gcaCG-UGaaGCGGUAGUGGCaGCG-CC- -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 2036 | 0.67 | 0.553553 |
Target: 5'- gCGUgGUGCUUCGCCAUguaCGCCuggaUCGCGu -3' miRNA: 3'- -GCA-CGUGAAGCGGUA---GUGGc---AGCGCc -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 32417 | 0.69 | 0.469042 |
Target: 5'- cCGU-CGC--CGCCGUUGCCGuUCGCGGc -3' miRNA: 3'- -GCAcGUGaaGCGGUAGUGGC-AGCGCC- -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 33017 | 0.7 | 0.410205 |
Target: 5'- cCGcUGCACcgggcgCGCCAguugaaUCGCCGaCGCGGu -3' miRNA: 3'- -GC-ACGUGaa----GCGGU------AGUGGCaGCGCC- -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 14665 | 0.71 | 0.347674 |
Target: 5'- gCGUGaCGCUggaGCgCGUCAgCGUCGCGa -3' miRNA: 3'- -GCAC-GUGAag-CG-GUAGUgGCAGCGCc -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 6519 | 0.71 | 0.339315 |
Target: 5'- uCGUGCACg-CGCCAggGCgG-CGCGGg -3' miRNA: 3'- -GCACGUGaaGCGGUagUGgCaGCGCC- -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 4648 | 0.71 | 0.331104 |
Target: 5'- cCGcUGCACcaccUCGCguaCGUCACCGUugCGCGGg -3' miRNA: 3'- -GC-ACGUGa---AGCG---GUAGUGGCA--GCGCC- -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 21140 | 0.73 | 0.277745 |
Target: 5'- aCGUGCcaGCggCGCCAUCGCCGcccgccguaUCGUGa -3' miRNA: 3'- -GCACG--UGaaGCGGUAGUGGC---------AGCGCc -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 36137 | 0.75 | 0.197137 |
Target: 5'- --gGCACcaUCGCCAUCACCG-CGCuGGa -3' miRNA: 3'- gcaCGUGa-AGCGGUAGUGGCaGCG-CC- -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 23888 | 0.76 | 0.162776 |
Target: 5'- aGUGCACgUUUGCCAUCugCcggGUCGCGc -3' miRNA: 3'- gCACGUG-AAGCGGUAGugG---CAGCGCc -5' |
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30541 | 3' | -55.5 | NC_006548.1 | + | 23843 | 1.11 | 0.000549 |
Target: 5'- aCGUGCACUUCGCCAUCACCGUCGCGGu -3' miRNA: 3'- -GCACGUGAAGCGGUAGUGGCAGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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