miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30541 3' -55.5 NC_006548.1 + 22017 0.66 0.642017
Target:  5'- cCGUcGCACcgccaccauccUUCGCCGUCACCcgaagaUCGUGa -3'
miRNA:   3'- -GCA-CGUG-----------AAGCGGUAGUGGc-----AGCGCc -5'
30541 3' -55.5 NC_006548.1 + 27527 0.66 0.630888
Target:  5'- -cUGCugUUCGCCGgcaUCGCCgGUUaCGGc -3'
miRNA:   3'- gcACGugAAGCGGU---AGUGG-CAGcGCC- -5'
30541 3' -55.5 NC_006548.1 + 16245 0.66 0.61976
Target:  5'- cCGcGCACcgCGCCGaaGCCGU-GCGGc -3'
miRNA:   3'- -GCaCGUGaaGCGGUagUGGCAgCGCC- -5'
30541 3' -55.5 NC_006548.1 + 17511 0.67 0.586482
Target:  5'- --aGCuGCggCGCCAUCGCCGcUGCuGGg -3'
miRNA:   3'- gcaCG-UGaaGCGGUAGUGGCaGCG-CC- -5'
30541 3' -55.5 NC_006548.1 + 2036 0.67 0.553553
Target:  5'- gCGUgGUGCUUCGCCAUguaCGCCuggaUCGCGu -3'
miRNA:   3'- -GCA-CGUGAAGCGGUA---GUGGc---AGCGCc -5'
30541 3' -55.5 NC_006548.1 + 32417 0.69 0.469042
Target:  5'- cCGU-CGC--CGCCGUUGCCGuUCGCGGc -3'
miRNA:   3'- -GCAcGUGaaGCGGUAGUGGC-AGCGCC- -5'
30541 3' -55.5 NC_006548.1 + 33017 0.7 0.410205
Target:  5'- cCGcUGCACcgggcgCGCCAguugaaUCGCCGaCGCGGu -3'
miRNA:   3'- -GC-ACGUGaa----GCGGU------AGUGGCaGCGCC- -5'
30541 3' -55.5 NC_006548.1 + 14665 0.71 0.347674
Target:  5'- gCGUGaCGCUggaGCgCGUCAgCGUCGCGa -3'
miRNA:   3'- -GCAC-GUGAag-CG-GUAGUgGCAGCGCc -5'
30541 3' -55.5 NC_006548.1 + 6519 0.71 0.339315
Target:  5'- uCGUGCACg-CGCCAggGCgG-CGCGGg -3'
miRNA:   3'- -GCACGUGaaGCGGUagUGgCaGCGCC- -5'
30541 3' -55.5 NC_006548.1 + 4648 0.71 0.331104
Target:  5'- cCGcUGCACcaccUCGCguaCGUCACCGUugCGCGGg -3'
miRNA:   3'- -GC-ACGUGa---AGCG---GUAGUGGCA--GCGCC- -5'
30541 3' -55.5 NC_006548.1 + 21140 0.73 0.277745
Target:  5'- aCGUGCcaGCggCGCCAUCGCCGcccgccguaUCGUGa -3'
miRNA:   3'- -GCACG--UGaaGCGGUAGUGGC---------AGCGCc -5'
30541 3' -55.5 NC_006548.1 + 36137 0.75 0.197137
Target:  5'- --gGCACcaUCGCCAUCACCG-CGCuGGa -3'
miRNA:   3'- gcaCGUGa-AGCGGUAGUGGCaGCG-CC- -5'
30541 3' -55.5 NC_006548.1 + 23888 0.76 0.162776
Target:  5'- aGUGCACgUUUGCCAUCugCcggGUCGCGc -3'
miRNA:   3'- gCACGUG-AAGCGGUAGugG---CAGCGCc -5'
30541 3' -55.5 NC_006548.1 + 23843 1.11 0.000549
Target:  5'- aCGUGCACUUCGCCAUCACCGUCGCGGu -3'
miRNA:   3'- -GCACGUGAAGCGGUAGUGGCAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.