miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30541 5' -52.1 NC_006548.1 + 38284 0.66 0.762304
Target:  5'- gGCCGaUGGCGACAuAGuCGUC-CUGUg -3'
miRNA:   3'- aUGGC-GCUGUUGUuUCcGCAGuGACG- -5'
30541 5' -52.1 NC_006548.1 + 37517 0.67 0.730429
Target:  5'- aGCCGUGGCGGCAuguacucccaaauuGGCGU-ACUGg -3'
miRNA:   3'- aUGGCGCUGUUGUuu------------CCGCAgUGACg -5'
30541 5' -52.1 NC_006548.1 + 36635 0.67 0.729312
Target:  5'- gGCCGCGGCGuuGAucGCGUCGacGCg -3'
miRNA:   3'- aUGGCGCUGUugUUucCGCAGUgaCG- -5'
30541 5' -52.1 NC_006548.1 + 36286 0.66 0.783576
Target:  5'- cGCgGCGGCAcugagcgauGCAGAucuGGCGcaGCUGCa -3'
miRNA:   3'- aUGgCGCUGU---------UGUUU---CCGCagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 35511 0.68 0.649156
Target:  5'- gGCCGUGGCAaggaucGCGGccugcuggaccAGGCGUCAUaucGCa -3'
miRNA:   3'- aUGGCGCUGU------UGUU-----------UCCGCAGUGa--CG- -5'
30541 5' -52.1 NC_006548.1 + 34236 0.66 0.773021
Target:  5'- gUugCGUGACGGCAAcaGCGUgACaggUGCa -3'
miRNA:   3'- -AugGCGCUGUUGUUucCGCAgUG---ACG- -5'
30541 5' -52.1 NC_006548.1 + 33301 0.69 0.614287
Target:  5'- gGCCGCGAgGAgCAu--GCGgCGCUGCg -3'
miRNA:   3'- aUGGCGCUgUU-GUuucCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 32940 0.67 0.729312
Target:  5'- gACCGCGuCGGCGAuucaacuGGCG-CGCccggUGCa -3'
miRNA:   3'- aUGGCGCuGUUGUUu------CCGCaGUG----ACG- -5'
30541 5' -52.1 NC_006548.1 + 32480 0.74 0.308642
Target:  5'- cGCCGCGaACGGCAAcGGCGgcgacgGCUGCc -3'
miRNA:   3'- aUGGCGC-UGUUGUUuCCGCag----UGACG- -5'
30541 5' -52.1 NC_006548.1 + 29624 0.66 0.740436
Target:  5'- gGCCGCGAaugggcucGCAGGugcuGGUGcCGCUGCc -3'
miRNA:   3'- aUGGCGCUgu------UGUUU----CCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 29482 0.66 0.773021
Target:  5'- --gCGCGGCAACGucGGCcagcgaUCGCUGa -3'
miRNA:   3'- augGCGCUGUUGUuuCCGc-----AGUGACg -5'
30541 5' -52.1 NC_006548.1 + 29438 0.67 0.705615
Target:  5'- aUACCGCGgccuccuGCAGCGAcaGGGUGcCAUcgGCg -3'
miRNA:   3'- -AUGGCGC-------UGUUGUU--UCCGCaGUGa-CG- -5'
30541 5' -52.1 NC_006548.1 + 29437 0.7 0.556653
Target:  5'- uUGCCGCG-CAGCAgcuggcccagAAGGCa--ACUGCg -3'
miRNA:   3'- -AUGGCGCuGUUGU----------UUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 28695 0.7 0.556653
Target:  5'- aGCgGCGACcuacGGCAAGGGCcggGCUGCg -3'
miRNA:   3'- aUGgCGCUG----UUGUUUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 28667 0.66 0.783576
Target:  5'- cGCCGCcugauGGCGugAAGGGUGUCuugGUg -3'
miRNA:   3'- aUGGCG-----CUGUugUUUCCGCAGugaCG- -5'
30541 5' -52.1 NC_006548.1 + 28600 0.68 0.659601
Target:  5'- cGCCGCGACcuggccggcgccgAGCAGGacuGCGUCAC-GCu -3'
miRNA:   3'- aUGGCGCUG-------------UUGUUUc--CGCAGUGaCG- -5'
30541 5' -52.1 NC_006548.1 + 27775 0.69 0.614287
Target:  5'- -cCUGCGcACGAucuuCGAAGGCGUCGCcucgGCc -3'
miRNA:   3'- auGGCGC-UGUU----GUUUCCGCAGUGa---CG- -5'
30541 5' -52.1 NC_006548.1 + 27237 0.68 0.660761
Target:  5'- cUGCCgagGCGGCAGCcAAGGCu--GCUGCu -3'
miRNA:   3'- -AUGG---CGCUGUUGuUUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 26303 0.69 0.57612
Target:  5'- cGCCGCGcgcuuuuacuaccuGCAGCAGAGcGCGUUcgGCgGCc -3'
miRNA:   3'- aUGGCGC--------------UGUUGUUUC-CGCAG--UGaCG- -5'
30541 5' -52.1 NC_006548.1 + 23908 0.68 0.649156
Target:  5'- aACCGCGACggUGAuGGCGaagugCACguuUGCc -3'
miRNA:   3'- aUGGCGCUGuuGUUuCCGCa----GUG---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.