miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30542 3' -54.2 NC_006548.1 + 24337 1.13 0.000337
Target:  5'- cCUGCCCAAUGGCAAACUGAGCAGGCCg -3'
miRNA:   3'- -GACGGGUUACCGUUUGACUCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 23406 0.76 0.159276
Target:  5'- uUGgCCAGUGGCAGACUGuAGCcccGGCg -3'
miRNA:   3'- gACgGGUUACCGUUUGAC-UCGu--CCGg -5'
30542 3' -54.2 NC_006548.1 + 30236 0.75 0.19988
Target:  5'- --aCCCAGaccUGGUcgcGGCUGGGCAGGCCu -3'
miRNA:   3'- gacGGGUU---ACCGu--UUGACUCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 15605 0.74 0.217298
Target:  5'- -aGCCCGAgGGCGgccGACUGuucGCAGGCg -3'
miRNA:   3'- gaCGGGUUaCCGU---UUGACu--CGUCCGg -5'
30542 3' -54.2 NC_006548.1 + 15968 0.74 0.22962
Target:  5'- -gGUCCuccAUGGCGccgcgGAUUGGGUAGGCCa -3'
miRNA:   3'- gaCGGGu--UACCGU-----UUGACUCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 21861 0.73 0.277435
Target:  5'- uCUGCUCGGUGGCAuGGCcGAGgGGGUUg -3'
miRNA:   3'- -GACGGGUUACCGU-UUGaCUCgUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 23117 0.71 0.332865
Target:  5'- --aCCCAAcGGCAgcAACUGAGCAG-CCu -3'
miRNA:   3'- gacGGGUUaCCGU--UUGACUCGUCcGG- -5'
30542 3' -54.2 NC_006548.1 + 14264 0.71 0.336267
Target:  5'- cCUGgCCGAUGGCcggaugacccuggacGAGCUGAucgcggaccuGCAGGCg -3'
miRNA:   3'- -GACgGGUUACCG---------------UUUGACU----------CGUCCGg -5'
30542 3' -54.2 NC_006548.1 + 1106 0.71 0.341417
Target:  5'- -cGCCCAAUucGCGAGC-GAGCcuGGCCg -3'
miRNA:   3'- gaCGGGUUAc-CGUUUGaCUCGu-CCGG- -5'
30542 3' -54.2 NC_006548.1 + 15160 0.71 0.350126
Target:  5'- -cGgCCAuUGGCGAACUccagGAcGUAGGCCg -3'
miRNA:   3'- gaCgGGUuACCGUUUGA----CU-CGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 27093 0.7 0.396001
Target:  5'- -cGCCaCcAUGGCc--CUGAuGCGGGCCg -3'
miRNA:   3'- gaCGG-GuUACCGuuuGACU-CGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 30458 0.7 0.40563
Target:  5'- -cGCCCGGUGGCGAuuuCUGGaCAG-CCu -3'
miRNA:   3'- gaCGGGUUACCGUUu--GACUcGUCcGG- -5'
30542 3' -54.2 NC_006548.1 + 15230 0.69 0.425323
Target:  5'- uUGCCUAuccgGGCAucacCUGGGguGGCg -3'
miRNA:   3'- gACGGGUua--CCGUuu--GACUCguCCGg -5'
30542 3' -54.2 NC_006548.1 + 29351 0.69 0.445575
Target:  5'- gCUGCgcggucucgCCGAUGGCAcccugucGCUGcAGgAGGCCg -3'
miRNA:   3'- -GACG---------GGUUACCGUu------UGAC-UCgUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 12334 0.69 0.455901
Target:  5'- -gGCCCuGUGcGCcGACgggcGAGCGGGCa -3'
miRNA:   3'- gaCGGGuUAC-CGuUUGa---CUCGUCCGg -5'
30542 3' -54.2 NC_006548.1 + 37489 0.69 0.464254
Target:  5'- gUGUCCAAgucGCAAACgagacaaccccGGCAGGCCa -3'
miRNA:   3'- gACGGGUUac-CGUUUGac---------UCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 32965 0.69 0.47693
Target:  5'- -cGCCCGGUGcaGCGGcGCUG-GCcGGCCg -3'
miRNA:   3'- gaCGGGUUAC--CGUU-UGACuCGuCCGG- -5'
30542 3' -54.2 NC_006548.1 + 33296 0.68 0.487624
Target:  5'- -cGCCUggUcGGCAAAUUGcGGCAGcCCg -3'
miRNA:   3'- gaCGGGuuA-CCGUUUGAC-UCGUCcGG- -5'
30542 3' -54.2 NC_006548.1 + 7593 0.68 0.498429
Target:  5'- aCUGCgUGAaGGCuucgccaaguuGGCcGAGCAGGCCg -3'
miRNA:   3'- -GACGgGUUaCCGu----------UUGaCUCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 26974 0.68 0.50934
Target:  5'- -gGCCgAGcaagcUGGCcguAAGCUGAGCAGcGUCg -3'
miRNA:   3'- gaCGGgUU-----ACCG---UUUGACUCGUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.