miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30542 3' -54.2 NC_006548.1 + 30458 0.7 0.40563
Target:  5'- -cGCCCGGUGGCGAuuuCUGGaCAG-CCu -3'
miRNA:   3'- gaCGGGUUACCGUUu--GACUcGUCcGG- -5'
30542 3' -54.2 NC_006548.1 + 15230 0.69 0.425323
Target:  5'- uUGCCUAuccgGGCAucacCUGGGguGGCg -3'
miRNA:   3'- gACGGGUua--CCGUuu--GACUCguCCGg -5'
30542 3' -54.2 NC_006548.1 + 37489 0.69 0.464254
Target:  5'- gUGUCCAAgucGCAAACgagacaaccccGGCAGGCCa -3'
miRNA:   3'- gACGGGUUac-CGUUUGac---------UCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 32965 0.69 0.47693
Target:  5'- -cGCCCGGUGcaGCGGcGCUG-GCcGGCCg -3'
miRNA:   3'- gaCGGGUUAC--CGUU-UGACuCGuCCGG- -5'
30542 3' -54.2 NC_006548.1 + 37866 0.68 0.50934
Target:  5'- gCUGCaaaucaGAUGGCAGGaucGGGCAcGGCCu -3'
miRNA:   3'- -GACGgg----UUACCGUUUga-CUCGU-CCGG- -5'
30542 3' -54.2 NC_006548.1 + 26974 0.68 0.50934
Target:  5'- -gGCCgAGcaagcUGGCcguAAGCUGAGCAGcGUCg -3'
miRNA:   3'- gaCGGgUU-----ACCG---UUUGACUCGUC-CGG- -5'
30542 3' -54.2 NC_006548.1 + 16767 0.67 0.565233
Target:  5'- -aGCCCuAUGG---ACUGGGCcuGGCCc -3'
miRNA:   3'- gaCGGGuUACCguuUGACUCGu-CCGG- -5'
30542 3' -54.2 NC_006548.1 + 29351 0.69 0.445575
Target:  5'- gCUGCgcggucucgCCGAUGGCAcccugucGCUGcAGgAGGCCg -3'
miRNA:   3'- -GACG---------GGUUACCGUu------UGAC-UCgUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 24115 0.67 0.552772
Target:  5'- uCU-CCCGAUGGCAugUUGGGUcugauagAGGUCa -3'
miRNA:   3'- -GAcGGGUUACCGUuuGACUCG-------UCCGG- -5'
30542 3' -54.2 NC_006548.1 + 24399 0.67 0.553902
Target:  5'- cCUGCUCAGUuuGCc-AUUGGGCAGGCg -3'
miRNA:   3'- -GACGGGUUAc-CGuuUGACUCGUCCGg -5'
30542 3' -54.2 NC_006548.1 + 7468 0.67 0.558427
Target:  5'- cCUGCCUgcagagcuuggucgcGAccaGGCAcccGACUGGGUggGGGCCg -3'
miRNA:   3'- -GACGGG---------------UUa--CCGU---UUGACUCG--UCCGG- -5'
30542 3' -54.2 NC_006548.1 + 20090 0.67 0.565233
Target:  5'- -gGCCCAGccauaGGCcggcgcauuGAGCuUGGGguGGCCg -3'
miRNA:   3'- gaCGGGUUa----CCG---------UUUG-ACUCguCCGG- -5'
30542 3' -54.2 NC_006548.1 + 24047 0.66 0.598398
Target:  5'- cCUGCCCcuggacgaguUGGCAGucGC-GAGCgccugccAGGCCg -3'
miRNA:   3'- -GACGGGuu--------ACCGUU--UGaCUCG-------UCCGG- -5'
30542 3' -54.2 NC_006548.1 + 21261 0.66 0.599548
Target:  5'- gUGCUacc-GGCAGcCUGGGC-GGCCa -3'
miRNA:   3'- gACGGguuaCCGUUuGACUCGuCCGG- -5'
30542 3' -54.2 NC_006548.1 + 25141 0.66 0.621439
Target:  5'- -cGCCCcuggaucGGUGGCcg---GGGCGGGCUg -3'
miRNA:   3'- gaCGGG-------UUACCGuuugaCUCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 3677 0.66 0.634134
Target:  5'- -aGCgCCGAggcGGUGAACUGGcGCuGGCUg -3'
miRNA:   3'- gaCG-GGUUa--CCGUUUGACU-CGuCCGG- -5'
30542 3' -54.2 NC_006548.1 + 13736 0.66 0.646827
Target:  5'- cCUGCUCGAUGGCGuccagccgguaggagAGCUGuucaugguucgccaGGCGuGCCu -3'
miRNA:   3'- -GACGGGUUACCGU---------------UUGAC--------------UCGUcCGG- -5'
30542 3' -54.2 NC_006548.1 + 37474 0.66 0.6572
Target:  5'- uUGCCCAccaGCGAGCUaGGCGguucugauuuGGCCg -3'
miRNA:   3'- gACGGGUuacCGUUUGAcUCGU----------CCGG- -5'
30542 3' -54.2 NC_006548.1 + 16312 0.66 0.6572
Target:  5'- -cGCCacuGGUGGCGAuCUcccggccaaGGGCGGGCUu -3'
miRNA:   3'- gaCGGg--UUACCGUUuGA---------CUCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 1478 0.68 0.50934
Target:  5'- -gGCCCAGgaacUGGaCGAACUGguucAGCAguuccuGGCCg -3'
miRNA:   3'- gaCGGGUU----ACC-GUUUGAC----UCGU------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.