miRNA display CGI


Results 41 - 50 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30542 3' -54.2 NC_006548.1 + 3677 0.66 0.634134
Target:  5'- -aGCgCCGAggcGGUGAACUGGcGCuGGCUg -3'
miRNA:   3'- gaCG-GGUUa--CCGUUUGACU-CGuCCGG- -5'
30542 3' -54.2 NC_006548.1 + 19120 0.66 0.645674
Target:  5'- gUGCUCAAcgcgGGCAGcgcagcGCUgggagauccGAGCGGGCUu -3'
miRNA:   3'- gACGGGUUa---CCGUU------UGA---------CUCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 14662 0.66 0.645674
Target:  5'- -cGCgCCAGgcgcuGCucGCUGAGCAgaaGGCCa -3'
miRNA:   3'- gaCG-GGUUac---CGuuUGACUCGU---CCGG- -5'
30542 3' -54.2 NC_006548.1 + 2330 0.66 0.645674
Target:  5'- gUGCCgAaggcAUGGCAGcacACuUGAGCgAGGCg -3'
miRNA:   3'- gACGGgU----UACCGUU---UG-ACUCG-UCCGg -5'
30542 3' -54.2 NC_006548.1 + 13736 0.66 0.646827
Target:  5'- cCUGCUCGAUGGCGuccagccgguaggagAGCUGuucaugguucgccaGGCGuGCCu -3'
miRNA:   3'- -GACGGGUUACCGU---------------UUGAC--------------UCGUcCGG- -5'
30542 3' -54.2 NC_006548.1 + 18171 0.66 0.650287
Target:  5'- -cGCCCAAUGGCuggggaugccaguGCUcAGuCAGcGCCu -3'
miRNA:   3'- gaCGGGUUACCGuu-----------UGAcUC-GUC-CGG- -5'
30542 3' -54.2 NC_006548.1 + 16969 0.66 0.6572
Target:  5'- aUGCCCGccGGCAu-----GCAGGCg -3'
miRNA:   3'- gACGGGUuaCCGUuugacuCGUCCGg -5'
30542 3' -54.2 NC_006548.1 + 4457 0.66 0.6572
Target:  5'- aUGUugCCGAUGGCcAGCggguaGAGCuGGCUc -3'
miRNA:   3'- gACG--GGUUACCGuUUGa----CUCGuCCGG- -5'
30542 3' -54.2 NC_006548.1 + 37474 0.66 0.6572
Target:  5'- uUGCCCAccaGCGAGCUaGGCGguucugauuuGGCCg -3'
miRNA:   3'- gACGGGUuacCGUUUGAcUCGU----------CCGG- -5'
30542 3' -54.2 NC_006548.1 + 16312 0.66 0.6572
Target:  5'- -cGCCacuGGUGGCGAuCUcccggccaaGGGCGGGCUu -3'
miRNA:   3'- gaCGGg--UUACCGUUuGA---------CUCGUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.