Results 41 - 50 of 50 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 15160 | 0.71 | 0.350126 |
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Target: 5'- -cGgCCAuUGGCGAACUccagGAcGUAGGCCg -3' miRNA: 3'- gaCgGGUuACCGUUUGA----CU-CGUCCGG- -5' |
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| 30542 | 3' | -54.2 | NC_006548.1 | + | 1106 | 0.71 | 0.341417 |
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Target: 5'- -cGCCCAAUucGCGAGC-GAGCcuGGCCg -3' miRNA: 3'- gaCGGGUUAc-CGUUUGaCUCGu-CCGG- -5' |
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| 30542 | 3' | -54.2 | NC_006548.1 | + | 14264 | 0.71 | 0.336267 |
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Target: 5'- cCUGgCCGAUGGCcggaugacccuggacGAGCUGAucgcggaccuGCAGGCg -3' miRNA: 3'- -GACgGGUUACCG---------------UUUGACU----------CGUCCGg -5' |
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| 30542 | 3' | -54.2 | NC_006548.1 | + | 23117 | 0.71 | 0.332865 |
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Target: 5'- --aCCCAAcGGCAgcAACUGAGCAG-CCu -3' miRNA: 3'- gacGGGUUaCCGU--UUGACUCGUCcGG- -5' |
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| 30542 | 3' | -54.2 | NC_006548.1 | + | 21861 | 0.73 | 0.277435 |
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Target: 5'- uCUGCUCGGUGGCAuGGCcGAGgGGGUUg -3' miRNA: 3'- -GACGGGUUACCGU-UUGaCUCgUCCGG- -5' |
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| 30542 | 3' | -54.2 | NC_006548.1 | + | 15968 | 0.74 | 0.22962 |
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Target: 5'- -gGUCCuccAUGGCGccgcgGAUUGGGUAGGCCa -3' miRNA: 3'- gaCGGGu--UACCGU-----UUGACUCGUCCGG- -5' |
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| 30542 | 3' | -54.2 | NC_006548.1 | + | 15605 | 0.74 | 0.217298 |
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Target: 5'- -aGCCCGAgGGCGgccGACUGuucGCAGGCg -3' miRNA: 3'- gaCGGGUUaCCGU---UUGACu--CGUCCGg -5' |
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| 30542 | 3' | -54.2 | NC_006548.1 | + | 30236 | 0.75 | 0.19988 |
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Target: 5'- --aCCCAGaccUGGUcgcGGCUGGGCAGGCCu -3' miRNA: 3'- gacGGGUU---ACCGu--UUGACUCGUCCGG- -5' |
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| 30542 | 3' | -54.2 | NC_006548.1 | + | 23406 | 0.76 | 0.159276 |
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Target: 5'- uUGgCCAGUGGCAGACUGuAGCcccGGCg -3' miRNA: 3'- gACgGGUUACCGUUUGAC-UCGu--CCGg -5' |
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| 30542 | 3' | -54.2 | NC_006548.1 | + | 24337 | 1.13 | 0.000337 |
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Target: 5'- cCUGCCCAAUGGCAAACUGAGCAGGCCg -3' miRNA: 3'- -GACGGGUUACCGUUUGACUCGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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