Results 41 - 50 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 27093 | 0.7 | 0.396001 |
|
Target: 5'- -cGCCaCcAUGGCc--CUGAuGCGGGCCg -3' miRNA: 3'- gaCGG-GuUACCGuuuGACU-CGUCCGG- -5' |
|||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 29351 | 0.69 | 0.445575 |
|
Target: 5'- gCUGCgcggucucgCCGAUGGCAcccugucGCUGcAGgAGGCCg -3' miRNA: 3'- -GACG---------GGUUACCGUu------UGAC-UCgUCCGG- -5' |
|||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 30236 | 0.75 | 0.19988 |
|
Target: 5'- --aCCCAGaccUGGUcgcGGCUGGGCAGGCCu -3' miRNA: 3'- gacGGGUU---ACCGu--UUGACUCGUCCGG- -5' |
|||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 30458 | 0.7 | 0.40563 |
|
Target: 5'- -cGCCCGGUGGCGAuuuCUGGaCAG-CCu -3' miRNA: 3'- gaCGGGUUACCGUUu--GACUcGUCcGG- -5' |
|||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 32747 | 0.67 | 0.588066 |
|
Target: 5'- -aGCCUu---GCAGGCUgGGGCGGGCg -3' miRNA: 3'- gaCGGGuuacCGUUUGA-CUCGUCCGg -5' |
|||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 32965 | 0.69 | 0.47693 |
|
Target: 5'- -cGCCCGGUGcaGCGGcGCUG-GCcGGCCg -3' miRNA: 3'- gaCGGGUUAC--CGUU-UGACuCGuCCGG- -5' |
|||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 33296 | 0.68 | 0.487624 |
|
Target: 5'- -cGCCUggUcGGCAAAUUGcGGCAGcCCg -3' miRNA: 3'- gaCGGGuuA-CCGUUUGAC-UCGUCcGG- -5' |
|||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 37474 | 0.66 | 0.6572 |
|
Target: 5'- uUGCCCAccaGCGAGCUaGGCGguucugauuuGGCCg -3' miRNA: 3'- gACGGGUuacCGUUUGAcUCGU----------CCGG- -5' |
|||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 37489 | 0.69 | 0.464254 |
|
Target: 5'- gUGUCCAAgucGCAAACgagacaaccccGGCAGGCCa -3' miRNA: 3'- gACGGGUUac-CGUUUGac---------UCGUCCGG- -5' |
|||||||
| 30542 | 3' | -54.2 | NC_006548.1 | + | 37866 | 0.68 | 0.50934 |
|
Target: 5'- gCUGCaaaucaGAUGGCAGGaucGGGCAcGGCCu -3' miRNA: 3'- -GACGgg----UUACCGUUUga-CUCGU-CCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home