miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30542 3' -54.2 NC_006548.1 + 12334 0.69 0.455901
Target:  5'- -gGCCCuGUGcGCcGACgggcGAGCGGGCa -3'
miRNA:   3'- gaCGGGuUAC-CGuUUGa---CUCGUCCGg -5'
30542 3' -54.2 NC_006548.1 + 7593 0.68 0.498429
Target:  5'- aCUGCgUGAaGGCuucgccaaguuGGCcGAGCAGGCCg -3'
miRNA:   3'- -GACGgGUUaCCGu----------UUGaCUCGUCCGG- -5'
30542 3' -54.2 NC_006548.1 + 7468 0.67 0.558427
Target:  5'- cCUGCCUgcagagcuuggucgcGAccaGGCAcccGACUGGGUggGGGCCg -3'
miRNA:   3'- -GACGGG---------------UUa--CCGU---UUGACUCG--UCCGG- -5'
30542 3' -54.2 NC_006548.1 + 7403 0.68 0.50934
Target:  5'- aUGCCCAGUucGCGGACgGAGUGGgaGCCu -3'
miRNA:   3'- gACGGGUUAc-CGUUUGaCUCGUC--CGG- -5'
30542 3' -54.2 NC_006548.1 + 4457 0.66 0.6572
Target:  5'- aUGUugCCGAUGGCcAGCggguaGAGCuGGCUc -3'
miRNA:   3'- gACG--GGUUACCGuUUGa----CUCGuCCGG- -5'
30542 3' -54.2 NC_006548.1 + 3677 0.66 0.634134
Target:  5'- -aGCgCCGAggcGGUGAACUGGcGCuGGCUg -3'
miRNA:   3'- gaCG-GGUUa--CCGUUUGACU-CGuCCGG- -5'
30542 3' -54.2 NC_006548.1 + 2330 0.66 0.645674
Target:  5'- gUGCCgAaggcAUGGCAGcacACuUGAGCgAGGCg -3'
miRNA:   3'- gACGGgU----UACCGUU---UG-ACUCG-UCCGg -5'
30542 3' -54.2 NC_006548.1 + 1478 0.68 0.50934
Target:  5'- -gGCCCAGgaacUGGaCGAACUGguucAGCAguuccuGGCCg -3'
miRNA:   3'- gaCGGGUU----ACC-GUUUGAC----UCGU------CCGG- -5'
30542 3' -54.2 NC_006548.1 + 1106 0.71 0.341417
Target:  5'- -cGCCCAAUucGCGAGC-GAGCcuGGCCg -3'
miRNA:   3'- gaCGGGUUAc-CGUUUGaCUCGu-CCGG- -5'
30542 3' -54.2 NC_006548.1 + 610 0.66 0.622592
Target:  5'- aUGCCCA--GGCc--CUG-GCAGaGCCg -3'
miRNA:   3'- gACGGGUuaCCGuuuGACuCGUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.