miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30543 3' -53.4 NC_006548.1 + 2895 0.66 0.738636
Target:  5'- aUGUUGU-CGGCcauggcccgaaugACCUUGuAGCGaCCGUCg -3'
miRNA:   3'- -ACGACAuGCUG-------------UGGAAC-UUGC-GGCGG- -5'
30543 3' -53.4 NC_006548.1 + 20193 0.66 0.717745
Target:  5'- cGCUGcGCuucuuguACAUCUUGcgguuCGCCGCCu -3'
miRNA:   3'- aCGACaUGc------UGUGGAACuu---GCGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 28408 0.66 0.706612
Target:  5'- cGCgGUACGucauCACCggcggGAccguucacgcGCGCCGCa -3'
miRNA:   3'- aCGaCAUGCu---GUGGaa---CU----------UGCGGCGg -5'
30543 3' -53.4 NC_006548.1 + 21142 0.66 0.706612
Target:  5'- gUGCca-GCGGCGCCau---CGCCGCCc -3'
miRNA:   3'- -ACGacaUGCUGUGGaacuuGCGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 20960 0.66 0.6954
Target:  5'- aGCUGcGCaGCACCUcg---GCCGCCg -3'
miRNA:   3'- aCGACaUGcUGUGGAacuugCGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 12583 0.67 0.684122
Target:  5'- aGCUGguCGGCGCC--GGAUGCCgagGCCa -3'
miRNA:   3'- aCGACauGCUGUGGaaCUUGCGG---CGG- -5'
30543 3' -53.4 NC_006548.1 + 14123 0.67 0.672791
Target:  5'- ---gGUAUGGCACU---GACGUCGCCg -3'
miRNA:   3'- acgaCAUGCUGUGGaacUUGCGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 2315 0.67 0.672791
Target:  5'- gGCUGcgcgGCGGCGCCggagcUGAccgGCuaCGCCu -3'
miRNA:   3'- aCGACa---UGCUGUGGa----ACU---UGcgGCGG- -5'
30543 3' -53.4 NC_006548.1 + 17511 0.67 0.661418
Target:  5'- aGCU--GCGGCGCCau---CGCCGCUg -3'
miRNA:   3'- aCGAcaUGCUGUGGaacuuGCGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 12516 0.67 0.638597
Target:  5'- aGCUGgccuCGGCAUCc--GGCGCCGaCCa -3'
miRNA:   3'- aCGACau--GCUGUGGaacUUGCGGC-GG- -5'
30543 3' -53.4 NC_006548.1 + 26284 0.67 0.62717
Target:  5'- cGCUGacCGACAUCcaGcGCGCCGCg -3'
miRNA:   3'- aCGACauGCUGUGGaaCuUGCGGCGg -5'
30543 3' -53.4 NC_006548.1 + 36033 0.67 0.62717
Target:  5'- aGCcgacGU-CGACACgUUGcagucgcGCGCCGCCa -3'
miRNA:   3'- aCGa---CAuGCUGUGgAACu------UGCGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 33331 0.68 0.615749
Target:  5'- cUGCUGUACG-C-CCUgcGugGCCGgCa -3'
miRNA:   3'- -ACGACAUGCuGuGGAacUugCGGCgG- -5'
30543 3' -53.4 NC_006548.1 + 32756 0.68 0.604343
Target:  5'- gGCUGgggcggGCGG-AUC-UGGGCGCUGCCg -3'
miRNA:   3'- aCGACa-----UGCUgUGGaACUUGCGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 20328 0.68 0.592963
Target:  5'- cGCgGUGaCGGCucugACCgaGAuccuGCGCCGCCu -3'
miRNA:   3'- aCGaCAU-GCUG----UGGaaCU----UGCGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 36327 0.68 0.592963
Target:  5'- cGCgagaucacgGUACGGCGCCUcgaUGAGC-CUGCg -3'
miRNA:   3'- aCGa--------CAUGCUGUGGA---ACUUGcGGCGg -5'
30543 3' -53.4 NC_006548.1 + 15684 0.68 0.581618
Target:  5'- cGCccaaUGU-CGACGCCUgcGAACagucgGCCGCCc -3'
miRNA:   3'- aCG----ACAuGCUGUGGAa-CUUG-----CGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 1261 0.68 0.569192
Target:  5'- cGCgGUGCGGCaggcuugGCUUUGAGCGUCGa- -3'
miRNA:   3'- aCGaCAUGCUG-------UGGAACUUGCGGCgg -5'
30543 3' -53.4 NC_006548.1 + 10229 0.69 0.547892
Target:  5'- uUGCUGgaggucUACcGCGCgaUGAGUGCCGCCa -3'
miRNA:   3'- -ACGAC------AUGcUGUGgaACUUGCGGCGG- -5'
30543 3' -53.4 NC_006548.1 + 22866 0.69 0.547892
Target:  5'- cGCUGaGCaGCACCUgguAGCGCCcgGCCu -3'
miRNA:   3'- aCGACaUGcUGUGGAac-UUGCGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.