miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30544 3' -63.1 NC_006548.1 + 8641 0.66 0.280629
Target:  5'- -aGGGACuCCAgGCCCGCCCgCaGCgCGuCCa -3'
miRNA:   3'- cgUUCUG-GGU-CGGGCGGG-GcCG-GU-GG- -5'
30544 3' -63.1 NC_006548.1 + 24430 0.66 0.280629
Target:  5'- uCAAGGCcggcacguuuCCGGCCCagaCCGGCCugCu -3'
miRNA:   3'- cGUUCUG----------GGUCGGGcggGGCCGGugG- -5'
30544 3' -63.1 NC_006548.1 + 25953 0.66 0.27652
Target:  5'- gGCAuuuGAUCUgcaauucgucguaacGGCCCGCgCgGGCCAgCa -3'
miRNA:   3'- -CGUu--CUGGG---------------UCGGGCGgGgCCGGUgG- -5'
30544 3' -63.1 NC_006548.1 + 21434 0.66 0.273808
Target:  5'- cGCGGGugauAUCgGGUCCgucuacaucGCCCCGGCCguucuGCCg -3'
miRNA:   3'- -CGUUC----UGGgUCGGG---------CGGGGCCGG-----UGG- -5'
30544 3' -63.1 NC_006548.1 + 37539 0.66 0.273808
Target:  5'- uGCGacuuGGACacgCCAGCCCaGCCgUGGCgGCa -3'
miRNA:   3'- -CGU----UCUG---GGUCGGG-CGGgGCCGgUGg -5'
30544 3' -63.1 NC_006548.1 + 22062 0.66 0.273808
Target:  5'- uGCGAcGGCCCAGCaCGCCgauguUCGGgCGCa -3'
miRNA:   3'- -CGUU-CUGGGUCGgGCGG-----GGCCgGUGg -5'
30544 3' -63.1 NC_006548.1 + 27441 0.66 0.273808
Target:  5'- gGCAuuGGCCUcaacacGGCCCGCCCggaaaugcuCGGUCaacuGCCg -3'
miRNA:   3'- -CGUu-CUGGG------UCGGGCGGG---------GCCGG----UGG- -5'
30544 3' -63.1 NC_006548.1 + 36534 0.66 0.273808
Target:  5'- cGCu-GACgCUGGUCagGCCCCGGCCGa- -3'
miRNA:   3'- -CGuuCUG-GGUCGGg-CGGGGCCGGUgg -5'
30544 3' -63.1 NC_006548.1 + 29811 0.66 0.273808
Target:  5'- gGUAGGAguaCCUGGaCCaCGgaCCUGGCCACCc -3'
miRNA:   3'- -CGUUCU---GGGUC-GG-GCg-GGGCCGGUGG- -5'
30544 3' -63.1 NC_006548.1 + 34670 0.66 0.273808
Target:  5'- cGC-AGACCgAGgaCgGCaCCGGCCACUa -3'
miRNA:   3'- -CGuUCUGGgUCg-GgCGgGGCCGGUGG- -5'
30544 3' -63.1 NC_006548.1 + 33207 0.66 0.26712
Target:  5'- --cGGGCCgCuGCCCGagcaCCGGCCAgCCc -3'
miRNA:   3'- cguUCUGG-GuCGGGCgg--GGCCGGU-GG- -5'
30544 3' -63.1 NC_006548.1 + 22995 0.66 0.265139
Target:  5'- ---cGGCCCAGUCCaccccgauaguccgGCCCaacucGCCGCCg -3'
miRNA:   3'- cguuCUGGGUCGGG--------------CGGGgc---CGGUGG- -5'
30544 3' -63.1 NC_006548.1 + 22434 0.66 0.260565
Target:  5'- ----aACUgGGCggCCGCUCUGGCCGCCc -3'
miRNA:   3'- cguucUGGgUCG--GGCGGGGCCGGUGG- -5'
30544 3' -63.1 NC_006548.1 + 25161 0.66 0.254141
Target:  5'- uGCAGGAUCUgcaGGUcauCCGCCCCuggaucGGUgGCCg -3'
miRNA:   3'- -CGUUCUGGG---UCG---GGCGGGG------CCGgUGG- -5'
30544 3' -63.1 NC_006548.1 + 578 0.66 0.254141
Target:  5'- uCAAGGCCCuGGUggaaaCGCUCCaGGCgGCCg -3'
miRNA:   3'- cGUUCUGGG-UCGg----GCGGGG-CCGgUGG- -5'
30544 3' -63.1 NC_006548.1 + 4475 0.66 0.254141
Target:  5'- gGguAGAgCUGGCUCGUCUugucgCGGCCGCUg -3'
miRNA:   3'- -CguUCUgGGUCGGGCGGG-----GCCGGUGG- -5'
30544 3' -63.1 NC_006548.1 + 20776 0.66 0.247848
Target:  5'- -gAAGGCCUGGUCaaggCCGGCCGCCu -3'
miRNA:   3'- cgUUCUGGGUCGGgcggGGCCGGUGG- -5'
30544 3' -63.1 NC_006548.1 + 28514 0.66 0.247848
Target:  5'- gGCAGGACCagcgugacgCAGuCCUGCUcggcgCCGGCCAg- -3'
miRNA:   3'- -CGUUCUGG---------GUC-GGGCGG-----GGCCGGUgg -5'
30544 3' -63.1 NC_006548.1 + 19213 0.67 0.241685
Target:  5'- --cAGGCCCAGguaUCGCCUgaCGGCaCGCCu -3'
miRNA:   3'- cguUCUGGGUCg--GGCGGG--GCCG-GUGG- -5'
30544 3' -63.1 NC_006548.1 + 24379 0.67 0.241685
Target:  5'- ---cGugCCGGCCuUGaCCCUgcagauGGCCACCg -3'
miRNA:   3'- cguuCugGGUCGG-GC-GGGG------CCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.