miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30544 5' -56.6 NC_006548.1 + 14842 0.66 0.560061
Target:  5'- gGGAUGACCUugGCAuugCCuuUGCGCUUCa -3'
miRNA:   3'- gCCUACUGGA--CGUcuaGG--ACGUGGGG- -5'
30544 5' -56.6 NC_006548.1 + 21435 0.66 0.56006
Target:  5'- gCGGGUGAUau-CGGGUCCgucuacauCGCCCCg -3'
miRNA:   3'- -GCCUACUGgacGUCUAGGac------GUGGGG- -5'
30544 5' -56.6 NC_006548.1 + 23225 0.66 0.549101
Target:  5'- uGGAUuGCCgGUAGAUCgCUGgACgCCa -3'
miRNA:   3'- gCCUAcUGGaCGUCUAG-GACgUGgGG- -5'
30544 5' -56.6 NC_006548.1 + 29344 0.66 0.538209
Target:  5'- aGGAUG-CgCUGCGcGGUCUcgccgaugGCACCCUg -3'
miRNA:   3'- gCCUACuG-GACGU-CUAGGa-------CGUGGGG- -5'
30544 5' -56.6 NC_006548.1 + 18449 0.66 0.537124
Target:  5'- uCGGGUGGCagcgGCGuGGUCUUcugcaggGCGCCCUg -3'
miRNA:   3'- -GCCUACUGga--CGU-CUAGGA-------CGUGGGG- -5'
30544 5' -56.6 NC_006548.1 + 25879 0.66 0.527392
Target:  5'- cCGcGcgGGCCguuacgacgaauUGCAGAUCaaaUGC-CCCCg -3'
miRNA:   3'- -GC-CuaCUGG------------ACGUCUAGg--ACGuGGGG- -5'
30544 5' -56.6 NC_006548.1 + 7699 0.66 0.516657
Target:  5'- uGGuguUGGCCaGCAGGcgccCCUGCGCUUCc -3'
miRNA:   3'- gCCu--ACUGGaCGUCUa---GGACGUGGGG- -5'
30544 5' -56.6 NC_006548.1 + 31652 0.66 0.506011
Target:  5'- uGGAUGGCCUggaugGCGGccCCU-CGCCCg -3'
miRNA:   3'- gCCUACUGGA-----CGUCuaGGAcGUGGGg -5'
30544 5' -56.6 NC_006548.1 + 29740 0.67 0.485009
Target:  5'- aGGGUGGCCagGUccguGGUCCagGUACUCCu -3'
miRNA:   3'- gCCUACUGGa-CGu---CUAGGa-CGUGGGG- -5'
30544 5' -56.6 NC_006548.1 + 17745 0.67 0.474666
Target:  5'- gCGGGUGGCCauCAGAUC-UGC-UCCCg -3'
miRNA:   3'- -GCCUACUGGacGUCUAGgACGuGGGG- -5'
30544 5' -56.6 NC_006548.1 + 34953 0.67 0.474666
Target:  5'- cCGG-UGACgaGCuGGcCCUGCGCCUg -3'
miRNA:   3'- -GCCuACUGgaCGuCUaGGACGUGGGg -5'
30544 5' -56.6 NC_006548.1 + 25131 0.67 0.464434
Target:  5'- uCGG-UGGCCgggGCgggcuGGGUCUugcgcucaaccuUGCGCCCCa -3'
miRNA:   3'- -GCCuACUGGa--CG-----UCUAGG------------ACGUGGGG- -5'
30544 5' -56.6 NC_006548.1 + 29406 0.67 0.464434
Target:  5'- uCGGcgaGACCgcGCAGcgcAUCCUGCAUgCCa -3'
miRNA:   3'- -GCCua-CUGGa-CGUC---UAGGACGUGgGG- -5'
30544 5' -56.6 NC_006548.1 + 8798 0.67 0.454318
Target:  5'- aGGAUGugCagcaguUGCAGAccgUCCUGCaugACgCCg -3'
miRNA:   3'- gCCUACugG------ACGUCU---AGGACG---UGgGG- -5'
30544 5' -56.6 NC_006548.1 + 16662 0.68 0.444322
Target:  5'- aGGAcggcGGCCUGCg---CCUGCucACCCCc -3'
miRNA:   3'- gCCUa---CUGGACGucuaGGACG--UGGGG- -5'
30544 5' -56.6 NC_006548.1 + 25751 0.68 0.444322
Target:  5'- -uGGUGcCCUuccuuacuucaGCAGAUCCUGCAgCUCu -3'
miRNA:   3'- gcCUACuGGA-----------CGUCUAGGACGUgGGG- -5'
30544 5' -56.6 NC_006548.1 + 6320 0.68 0.434451
Target:  5'- uGGAUGACCauccggGCGGAccaacugaUCaagGCGCCCa -3'
miRNA:   3'- gCCUACUGGa-----CGUCU--------AGga-CGUGGGg -5'
30544 5' -56.6 NC_006548.1 + 20752 0.68 0.424709
Target:  5'- gCGGGUGGCCaGCAGuugCUcGCGCUCg -3'
miRNA:   3'- -GCCUACUGGaCGUCua-GGaCGUGGGg -5'
30544 5' -56.6 NC_006548.1 + 17549 0.68 0.424708
Target:  5'- uGGAaGAUCUGCGcGAgcgCCUGCucgaucuagcuCCCCa -3'
miRNA:   3'- gCCUaCUGGACGU-CUa--GGACGu----------GGGG- -5'
30544 5' -56.6 NC_006548.1 + 15170 0.68 0.405621
Target:  5'- gCGGcgGAcgcauCCUGgAcGAguucgcCCUGCACCCCg -3'
miRNA:   3'- -GCCuaCU-----GGACgU-CUa-----GGACGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.