miRNA: 3'- -CGGugUcuAGCGC---------------GGcUCCGUGCGGA- -5'
miRNA: 3'- -CGGuGUCUA-GCgCG-GCU--CCGUGCGGA- -5'
Results 41 - 42 of 42 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30545 | 3' | -60 | NC_006548.1 | + | 13612 | 0.66 | 0.369678 |
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Target: 5'- aGCCugGauUCGCGauucgcaagccaagaCC-AGGCACGCCUg -3' miRNA: 3'- -CGGugUcuAGCGC---------------GGcUCCGUGCGGA- -5' |
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| 30545 | 3' | -60 | NC_006548.1 | + | 36003 | 0.66 | 0.39268 |
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Target: 5'- aGCUcCAGGUgCG-GCuCGAucGGCGCGCCUa -3' miRNA: 3'- -CGGuGUCUA-GCgCG-GCU--CCGUGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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