Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30546 | 5' | -60.2 | NC_006548.1 | + | 35335 | 0.66 | 0.347279 |
Target: 5'- cGCAGGUA--CCAG-GCC-GCCCAccaucGCCg -3' miRNA: 3'- -UGUCCGUugGGUCaCGGuCGGGU-----CGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 33208 | 0.66 | 0.347279 |
Target: 5'- uCGGGCcgcuGCCCgAGcaccgGCCAGCcCCGGUa -3' miRNA: 3'- uGUCCGu---UGGG-UCa----CGGUCG-GGUCGg -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 30402 | 0.66 | 0.338956 |
Target: 5'- --uGGCG--UCGGUGCC-GCCCAGgCCa -3' miRNA: 3'- uguCCGUugGGUCACGGuCGGGUC-GG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 20147 | 0.66 | 0.338956 |
Target: 5'- --cGGCAccACCUGGUG-CGGCUCGGCa -3' miRNA: 3'- uguCCGU--UGGGUCACgGUCGGGUCGg -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 19402 | 0.66 | 0.338956 |
Target: 5'- aACA-GCAGCUCGcUGCC-GUCCAGCUg -3' miRNA: 3'- -UGUcCGUUGGGUcACGGuCGGGUCGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 22803 | 0.66 | 0.338956 |
Target: 5'- cCGGGCGcuACCaGGUGCU-GCUCAGCg -3' miRNA: 3'- uGUCCGU--UGGgUCACGGuCGGGUCGg -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 28967 | 0.66 | 0.338956 |
Target: 5'- cACGGGUGACaCCgaaGGcGCUGGCCUGGUCa -3' miRNA: 3'- -UGUCCGUUG-GG---UCaCGGUCGGGUCGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 29701 | 0.66 | 0.330779 |
Target: 5'- cGCuGGCAGCggcaCCAGcaccUGCgAGCCCauucgcGGCCg -3' miRNA: 3'- -UGuCCGUUG----GGUC----ACGgUCGGG------UCGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 5677 | 0.66 | 0.330779 |
Target: 5'- -aAGGCGugCCGGaagaCCAGCUCGacGCCa -3' miRNA: 3'- ugUCCGUugGGUCac--GGUCGGGU--CGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 37096 | 0.66 | 0.322749 |
Target: 5'- aGCGGGUAGguCCaggucGUGCCGGUCaAGCCg -3' miRNA: 3'- -UGUCCGUU--GGgu---CACGGUCGGgUCGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 14390 | 0.66 | 0.322749 |
Target: 5'- -uGGGCAGCUC---GCCGGCUuCGGCCu -3' miRNA: 3'- ugUCCGUUGGGucaCGGUCGG-GUCGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 36615 | 0.66 | 0.321954 |
Target: 5'- cGCGGGgAugCgucgauaCGGUGCCAGCgCCgcaugaGGCCg -3' miRNA: 3'- -UGUCCgUugG-------GUCACGGUCG-GG------UCGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 18182 | 0.66 | 0.314865 |
Target: 5'- -uGGGgAugCCAGUGCuCAGUCagcGCCu -3' miRNA: 3'- ugUCCgUugGGUCACG-GUCGGgu-CGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 5646 | 0.66 | 0.306362 |
Target: 5'- ---cGCcaaCCAGUugcgcaaGCCGGCCCGGCCu -3' miRNA: 3'- ugucCGuugGGUCA-------CGGUCGGGUCGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 27879 | 0.67 | 0.299536 |
Target: 5'- -aGGGCAagguccagACCCAGgaGCuaguucugCAGCUCGGCCa -3' miRNA: 3'- ugUCCGU--------UGGGUCa-CG--------GUCGGGUCGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 921 | 0.67 | 0.299536 |
Target: 5'- gGCuGGCAACCa-----CAGCCCAGCa -3' miRNA: 3'- -UGuCCGUUGGgucacgGUCGGGUCGg -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 30778 | 0.67 | 0.298785 |
Target: 5'- -gGGGCugcugaugcCCCGGUGCCGGUcgcuaacgucggaCCAGCg -3' miRNA: 3'- ugUCCGuu-------GGGUCACGGUCG-------------GGUCGg -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 18980 | 0.67 | 0.29209 |
Target: 5'- uGCAGGCGccauguagGCCCccgaGCCGGaacuggcgauuuCCCGGCCg -3' miRNA: 3'- -UGUCCGU--------UGGGuca-CGGUC------------GGGUCGG- -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 9790 | 0.67 | 0.290619 |
Target: 5'- uACGGGCGuaaccguuuuccuuuGCCCAcucggugaagguuuUGCCGGCCUGGCg -3' miRNA: 3'- -UGUCCGU---------------UGGGUc-------------ACGGUCGGGUCGg -5' |
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30546 | 5' | -60.2 | NC_006548.1 | + | 19974 | 0.67 | 0.289153 |
Target: 5'- cCGGGCGACCaucgagagcgacGUGCCGG-CCGGCg -3' miRNA: 3'- uGUCCGUUGGgu----------CACGGUCgGGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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