miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30546 5' -60.2 NC_006548.1 + 32470 0.67 0.28479
Target:  5'- gGCAacGGCGGCgaCGGcUGCCGGCCaGGCUg -3'
miRNA:   3'- -UGU--CCGUUGg-GUC-ACGGUCGGgUCGG- -5'
30546 5' -60.2 NC_006548.1 + 32762 0.67 0.28479
Target:  5'- gGCGGGCgGAUCUGGgcgcUGCCGGUgUGGCCg -3'
miRNA:   3'- -UGUCCG-UUGGGUC----ACGGUCGgGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 29639 0.67 0.28479
Target:  5'- cGCAGGUGcuggugccgcuGCCagCGGUGCCGGUgCGGCa -3'
miRNA:   3'- -UGUCCGU-----------UGG--GUCACGGUCGgGUCGg -5'
30546 5' -60.2 NC_006548.1 + 22496 0.67 0.28479
Target:  5'- -gGGGCGGCCagAGcgGCC-GCCCAGUg -3'
miRNA:   3'- ugUCCGUUGGg-UCa-CGGuCGGGUCGg -5'
30546 5' -60.2 NC_006548.1 + 9260 0.67 0.28479
Target:  5'- cACGGGCugGAUCUGGa--CGGCCUAGCCg -3'
miRNA:   3'- -UGUCCG--UUGGGUCacgGUCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 8513 0.67 0.270625
Target:  5'- -aAGGC--CCUAG-GCgaAGCCCGGCCa -3'
miRNA:   3'- ugUCCGuuGGGUCaCGg-UCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 17081 0.67 0.263757
Target:  5'- aGguGGCGaguACCCAGgGCaccCCCGGCCg -3'
miRNA:   3'- -UguCCGU---UGGGUCaCGgucGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 16578 0.68 0.257031
Target:  5'- uGCuGGUGACgCGGUcCCAGCCCAcGCg -3'
miRNA:   3'- -UGuCCGUUGgGUCAcGGUCGGGU-CGg -5'
30546 5' -60.2 NC_006548.1 + 18709 0.68 0.250446
Target:  5'- ---aGCGACCC--UGCCGcagauccucGCCCAGCCg -3'
miRNA:   3'- ugucCGUUGGGucACGGU---------CGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 14399 0.68 0.250446
Target:  5'- gGC-GGCAAUUC-GUGCCAGCaCCgaggcGGCCa -3'
miRNA:   3'- -UGuCCGUUGGGuCACGGUCG-GG-----UCGG- -5'
30546 5' -60.2 NC_006548.1 + 5567 0.68 0.250446
Target:  5'- uACGcGCAGgCCAG-GCCGGgCCGGCUu -3'
miRNA:   3'- -UGUcCGUUgGGUCaCGGUCgGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 34153 0.68 0.237695
Target:  5'- aGCcGGCAuuugaucugcACCCGGcUGUCGGCC-GGCCa -3'
miRNA:   3'- -UGuCCGU----------UGGGUC-ACGGUCGGgUCGG- -5'
30546 5' -60.2 NC_006548.1 + 4277 0.68 0.237695
Target:  5'- cCAGGCA--UCGG-GCCAGCuCCGGCg -3'
miRNA:   3'- uGUCCGUugGGUCaCGGUCG-GGUCGg -5'
30546 5' -60.2 NC_006548.1 + 27535 0.68 0.231525
Target:  5'- cGCcGGCAuCgCCGGUuaCGGCCUGGCCu -3'
miRNA:   3'- -UGuCCGUuG-GGUCAcgGUCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 20220 0.68 0.231525
Target:  5'- --cGGCuuCCuCGGUGCCGuGCCgcCGGCCa -3'
miRNA:   3'- uguCCGuuGG-GUCACGGU-CGG--GUCGG- -5'
30546 5' -60.2 NC_006548.1 + 24356 0.68 0.230308
Target:  5'- aGCAGGCcggucugGGCCgGaaacGUGCCGGCCUugacccugcagauGGCCa -3'
miRNA:   3'- -UGUCCG-------UUGGgU----CACGGUCGGG-------------UCGG- -5'
30546 5' -60.2 NC_006548.1 + 6866 0.68 0.225492
Target:  5'- uGCAGGCuGCgcaguUCGGUGaCCGGCuCCGGCg -3'
miRNA:   3'- -UGUCCGuUG-----GGUCAC-GGUCG-GGUCGg -5'
30546 5' -60.2 NC_006548.1 + 20720 0.68 0.225492
Target:  5'- cACAGGUGGCCCAGcaaaaAGCCCAGg- -3'
miRNA:   3'- -UGUCCGUUGGGUCacgg-UCGGGUCgg -5'
30546 5' -60.2 NC_006548.1 + 21179 0.69 0.219592
Target:  5'- cCAuGGCAGCUCGGa--CGGCCUGGCCg -3'
miRNA:   3'- uGU-CCGUUGGGUCacgGUCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 8478 0.69 0.213824
Target:  5'- uACAuGCAgACCCucaucgagGCCGGCCUGGCCg -3'
miRNA:   3'- -UGUcCGU-UGGGuca-----CGGUCGGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.