miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30546 5' -60.2 NC_006548.1 + 4277 0.68 0.237695
Target:  5'- cCAGGCA--UCGG-GCCAGCuCCGGCg -3'
miRNA:   3'- uGUCCGUugGGUCaCGGUCG-GGUCGg -5'
30546 5' -60.2 NC_006548.1 + 19243 0.69 0.202678
Target:  5'- --uGGCAGCCCuuGUcGCCGGCCUA-CCu -3'
miRNA:   3'- uguCCGUUGGGu-CA-CGGUCGGGUcGG- -5'
30546 5' -60.2 NC_006548.1 + 36177 0.69 0.208187
Target:  5'- uGCcGGCAGCCgGGacGUccgCAGUCCAGCCg -3'
miRNA:   3'- -UGuCCGUUGGgUCa-CG---GUCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 21179 0.69 0.219592
Target:  5'- cCAuGGCAGCUCGGa--CGGCCUGGCCg -3'
miRNA:   3'- uGU-CCGUUGGGUCacgGUCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 20720 0.68 0.225492
Target:  5'- cACAGGUGGCCCAGcaaaaAGCCCAGg- -3'
miRNA:   3'- -UGUCCGUUGGGUCacgg-UCGGGUCgg -5'
30546 5' -60.2 NC_006548.1 + 6866 0.68 0.225492
Target:  5'- uGCAGGCuGCgcaguUCGGUGaCCGGCuCCGGCg -3'
miRNA:   3'- -UGUCCGuUG-----GGUCAC-GGUCG-GGUCGg -5'
30546 5' -60.2 NC_006548.1 + 24356 0.68 0.230308
Target:  5'- aGCAGGCcggucugGGCCgGaaacGUGCCGGCCUugacccugcagauGGCCa -3'
miRNA:   3'- -UGUCCG-------UUGGgU----CACGGUCGGG-------------UCGG- -5'
30546 5' -60.2 NC_006548.1 + 20220 0.68 0.231525
Target:  5'- --cGGCuuCCuCGGUGCCGuGCCgcCGGCCa -3'
miRNA:   3'- uguCCGuuGG-GUCACGGU-CGG--GUCGG- -5'
30546 5' -60.2 NC_006548.1 + 27535 0.68 0.231525
Target:  5'- cGCcGGCAuCgCCGGUuaCGGCCUGGCCu -3'
miRNA:   3'- -UGuCCGUuG-GGUCAcgGUCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 28034 0.69 0.202678
Target:  5'- uCGGcGCGGCCCugcAGgagGCCuauGGUCCAGCCu -3'
miRNA:   3'- uGUC-CGUUGGG---UCa--CGG---UCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 20448 0.69 0.196766
Target:  5'- cGCGcGGCGagcagucACCCacGGUGCCAguGCCCAGgCg -3'
miRNA:   3'- -UGU-CCGU-------UGGG--UCACGGU--CGGGUCgG- -5'
30546 5' -60.2 NC_006548.1 + 2727 0.7 0.177003
Target:  5'- uGCAGGCGGCgCAGggcaagcacgcUGCCGGuacggauguuCCCAGCUu -3'
miRNA:   3'- -UGUCCGUUGgGUC-----------ACGGUC----------GGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 19534 0.74 0.092784
Target:  5'- uACA--CAAUCCAGaUGCCGGCUCGGCCa -3'
miRNA:   3'- -UGUccGUUGGGUC-ACGGUCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 29099 0.73 0.098258
Target:  5'- cCAGGCcGCCCAGcagGCCGGUCUcgucagcgaacuGGCCg -3'
miRNA:   3'- uGUCCGuUGGGUCa--CGGUCGGG------------UCGG- -5'
30546 5' -60.2 NC_006548.1 + 3602 0.72 0.119907
Target:  5'- aGCAGGUAGCagCCAGcGCCAGUUCAccGCCu -3'
miRNA:   3'- -UGUCCGUUG--GGUCaCGGUCGGGU--CGG- -5'
30546 5' -60.2 NC_006548.1 + 32957 0.72 0.119907
Target:  5'- aACuGGCGcGCCCGGUGCagCGGCgCUGGCCg -3'
miRNA:   3'- -UGuCCGU-UGGGUCACG--GUCG-GGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 14308 0.72 0.122994
Target:  5'- uGCAGGCGcaguucccgAgCCAG-GCCGaagccggcgagcuGCCCAGCCg -3'
miRNA:   3'- -UGUCCGU---------UgGGUCaCGGU-------------CGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 4557 0.71 0.141917
Target:  5'- --cGGaCAACUgcuUGCCAGCCCGGCCg -3'
miRNA:   3'- uguCC-GUUGGgucACGGUCGGGUCGG- -5'
30546 5' -60.2 NC_006548.1 + 20179 0.71 0.158586
Target:  5'- cCAGGCAACCCGGUuCCGGgCaAGCa -3'
miRNA:   3'- uGUCCGUUGGGUCAcGGUCgGgUCGg -5'
30546 5' -60.2 NC_006548.1 + 848 0.7 0.161679
Target:  5'- uGCcGGCGGCUCgcuugcugggcuguGGuUGCCAGCCCAGgCg -3'
miRNA:   3'- -UGuCCGUUGGG--------------UC-ACGGUCGGGUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.