Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30547 | 5' | -56.7 | NC_006548.1 | + | 26850 | 1.1 | 0.000317 |
Target: 5'- uUGCCGUAGUCCUCUCCCAUGGCCAACa -3' miRNA: 3'- -ACGGCAUCAGGAGAGGGUACCGGUUG- -5' |
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30547 | 5' | -56.7 | NC_006548.1 | + | 18716 | 0.67 | 0.45699 |
Target: 5'- cUGCCGcAGaUCCUCgCCCAgccgcaGGCCGu- -3' miRNA: 3'- -ACGGCaUC-AGGAGaGGGUa-----CCGGUug -5' |
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30547 | 5' | -56.7 | NC_006548.1 | + | 25709 | 0.68 | 0.361722 |
Target: 5'- aUGCCGcuuugcuUCCUCUCCCccGGCgAAUg -3' miRNA: 3'- -ACGGCauc----AGGAGAGGGuaCCGgUUG- -5' |
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30547 | 5' | -56.7 | NC_006548.1 | + | 17441 | 0.67 | 0.436847 |
Target: 5'- cGCCGUGG-CCUCggCCUggGUGGaCuCAACu -3' miRNA: 3'- aCGGCAUCaGGAGa-GGG--UACC-G-GUUG- -5' |
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30547 | 5' | -56.7 | NC_006548.1 | + | 6086 | 0.67 | 0.436847 |
Target: 5'- gGCCGUcaGGUCUUCuauguccuUCCCAaGGUCGAg -3' miRNA: 3'- aCGGCA--UCAGGAG--------AGGGUaCCGGUUg -5' |
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30547 | 5' | -56.7 | NC_006548.1 | + | 18438 | 0.67 | 0.45699 |
Target: 5'- cGgCGUGGUCUUCUgcagggcgCCC-UGGaCCAACu -3' miRNA: 3'- aCgGCAUCAGGAGA--------GGGuACC-GGUUG- -5' |
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30547 | 5' | -56.7 | NC_006548.1 | + | 32704 | 0.67 | 0.45699 |
Target: 5'- cGCCGUuGcUCgaCUCCCGacgugcUGGUCAGCa -3' miRNA: 3'- aCGGCAuC-AGgaGAGGGU------ACCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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