Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 27076 | 0.68 | 0.433758 |
Target: 5'- ---uGCgGGCCGUcuGCUGAuCGGCGg -3' miRNA: 3'- cguuCGaCCGGCAuuCGACUcGUCGC- -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 13096 | 0.68 | 0.433758 |
Target: 5'- ---uGCUGcaGCUGcAGGUUGAGCAGCGc -3' miRNA: 3'- cguuCGAC--CGGCaUUCGACUCGUCGC- -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 25830 | 0.68 | 0.433758 |
Target: 5'- cGUGAGCgggagGGCCuu-GGCUGGGCuGGCa -3' miRNA: 3'- -CGUUCGa----CCGGcauUCGACUCG-UCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 10195 | 0.69 | 0.423795 |
Target: 5'- ---uGCUGGCCcaGAGCUaccuccagacGAGCAGCu -3' miRNA: 3'- cguuCGACCGGcaUUCGA----------CUCGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 27735 | 0.69 | 0.417883 |
Target: 5'- uGguGGC-GGCCGcgaaagaaaccccgGAGCUGGGCAGUu -3' miRNA: 3'- -CguUCGaCCGGCa-------------UUCGACUCGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 36806 | 0.69 | 0.41397 |
Target: 5'- uGCGAGCgucGCCG--AGCUGGuGCGGCu -3' miRNA: 3'- -CGUUCGac-CGGCauUCGACU-CGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 30848 | 0.69 | 0.394746 |
Target: 5'- cGCuGGGCUgcGGCCGUuauGC-GGGCAGCa -3' miRNA: 3'- -CG-UUCGA--CCGGCAuu-CGaCUCGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 27334 | 0.69 | 0.385353 |
Target: 5'- cGCucGcCUGGCCG--AGCagGAGCGGCa -3' miRNA: 3'- -CGuuC-GACCGGCauUCGa-CUCGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 4703 | 0.69 | 0.384422 |
Target: 5'- uCGGGCUGGCCGaucaggaUGAuGCUGAcCAGCu -3' miRNA: 3'- cGUUCGACCGGC-------AUU-CGACUcGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 21443 | 0.7 | 0.340656 |
Target: 5'- uGCAAGUgguggcGGCCGgcGGCaGAGUcGCGg -3' miRNA: 3'- -CGUUCGa-----CCGGCauUCGaCUCGuCGC- -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 14411 | 0.7 | 0.33218 |
Target: 5'- aGCGAuGCacGGCUGcacGGCUGGGCAGCu -3' miRNA: 3'- -CGUU-CGa-CCGGCau-UCGACUCGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 7576 | 0.71 | 0.323859 |
Target: 5'- cCAAGUUGGCCGagcAGGCcGAGgAGCa -3' miRNA: 3'- cGUUCGACCGGCa--UUCGaCUCgUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 14365 | 0.71 | 0.307686 |
Target: 5'- uGCAucGCUacGGCCagAAGCUgGAGCGGCGg -3' miRNA: 3'- -CGUu-CGA--CCGGcaUUCGA-CUCGUCGC- -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 28998 | 0.72 | 0.251886 |
Target: 5'- aGCAAGCUgaugggaaucgagaaGGCCaaggcUGAGCUGcAGCAGCu -3' miRNA: 3'- -CGUUCGA---------------CCGGc----AUUCGAC-UCGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 27764 | 0.73 | 0.236082 |
Target: 5'- aUAGGCuUGGCUGgu-GUUGAGCAGCu -3' miRNA: 3'- cGUUCG-ACCGGCauuCGACUCGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 1119 | 0.73 | 0.219909 |
Target: 5'- aGCGAGcCUGGCCGUcuGCgcggccagcaacgccUGuGCGGCGa -3' miRNA: 3'- -CGUUC-GACCGGCAuuCG---------------ACuCGUCGC- -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 17610 | 0.73 | 0.211598 |
Target: 5'- cCAGGCcaUGGCCGagGGGCUGgaGGCAGCu -3' miRNA: 3'- cGUUCG--ACCGGCa-UUCGAC--UCGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 17468 | 0.74 | 0.200195 |
Target: 5'- cGC-AGCUGGCCG-AAGCgauGCAGCc -3' miRNA: 3'- -CGuUCGACCGGCaUUCGacuCGUCGc -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 35942 | 0.75 | 0.155299 |
Target: 5'- gGCGAGUUGGCCGgcaGGgUG-GCGGCGc -3' miRNA: 3'- -CGUUCGACCGGCau-UCgACuCGUCGC- -5' |
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30548 | 3' | -55.2 | NC_006548.1 | + | 33140 | 0.82 | 0.053505 |
Target: 5'- -gGGGCUGGCCGgu-GCUcGGGCAGCGg -3' miRNA: 3'- cgUUCGACCGGCauuCGA-CUCGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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