miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30549 5' -50.1 NC_006548.1 + 14660 0.66 0.904487
Target:  5'- aCGCUG-GAGCGCgUcagcGUCGCGAUGUUc -3'
miRNA:   3'- gGCGGUaCUUGCGgA----UAGUGUUACGG- -5'
30549 5' -50.1 NC_006548.1 + 29361 0.66 0.904487
Target:  5'- cUCGCCgAUGGcAC-CCUGUCGCugcaggagGCCg -3'
miRNA:   3'- -GGCGG-UACU-UGcGGAUAGUGuua-----CGG- -5'
30549 5' -50.1 NC_006548.1 + 19224 0.66 0.904487
Target:  5'- aUCGCC-UGAcggcACGCCUuggcagcccuuGUCGCcg-GCCu -3'
miRNA:   3'- -GGCGGuACU----UGCGGA-----------UAGUGuuaCGG- -5'
30549 5' -50.1 NC_006548.1 + 24325 0.66 0.904487
Target:  5'- -gGCCGgcGAGCGCCUGcC-CAAUGgCa -3'
miRNA:   3'- ggCGGUa-CUUGCGGAUaGuGUUACgG- -5'
30549 5' -50.1 NC_006548.1 + 22645 0.66 0.897231
Target:  5'- gCGCCGuccuggaguUGAACGCCgg-C-CAGUugGCCg -3'
miRNA:   3'- gGCGGU---------ACUUGCGGauaGuGUUA--CGG- -5'
30549 5' -50.1 NC_006548.1 + 4567 0.66 0.897231
Target:  5'- gCGCUgaucGAGCGCCUGagCACcaGcgGCCg -3'
miRNA:   3'- gGCGGua--CUUGCGGAUa-GUG--UuaCGG- -5'
30549 5' -50.1 NC_006548.1 + 8815 0.66 0.89723
Target:  5'- gCCGCCAgguAGCGUgUGaucagCGgAAUGCCa -3'
miRNA:   3'- -GGCGGUac-UUGCGgAUa----GUgUUACGG- -5'
30549 5' -50.1 NC_006548.1 + 25963 0.66 0.89723
Target:  5'- gCGCCAUcGAGCGCUUGcccggagaccUCAUGuccGCCc -3'
miRNA:   3'- gGCGGUA-CUUGCGGAU----------AGUGUua-CGG- -5'
30549 5' -50.1 NC_006548.1 + 13676 0.66 0.889675
Target:  5'- aCCGgC-UGGACGCC-AUCgaGCAG-GCCg -3'
miRNA:   3'- -GGCgGuACUUGCGGaUAG--UGUUaCGG- -5'
30549 5' -50.1 NC_006548.1 + 30476 0.66 0.889675
Target:  5'- aCGCCGUGc-CGCCcAUCAg---GCCa -3'
miRNA:   3'- gGCGGUACuuGCGGaUAGUguuaCGG- -5'
30549 5' -50.1 NC_006548.1 + 24092 0.66 0.881825
Target:  5'- cCCGCCAaGAaacaagACGCCgccAUCcCGGcGCCg -3'
miRNA:   3'- -GGCGGUaCU------UGCGGa--UAGuGUUaCGG- -5'
30549 5' -50.1 NC_006548.1 + 6459 0.66 0.881825
Target:  5'- gCGCC----GCGCCUGgcgcgugCACGAUGaCCu -3'
miRNA:   3'- gGCGGuacuUGCGGAUa------GUGUUAC-GG- -5'
30549 5' -50.1 NC_006548.1 + 1771 0.66 0.873689
Target:  5'- gCCGCCAUucucGACgGCCUAcauacgcugcaUCugGAUcGCCa -3'
miRNA:   3'- -GGCGGUAc---UUG-CGGAU-----------AGugUUA-CGG- -5'
30549 5' -50.1 NC_006548.1 + 16012 0.66 0.873688
Target:  5'- uCCGCUucacugcgGAGCGCaCUG-CugAcgGCCa -3'
miRNA:   3'- -GGCGGua------CUUGCG-GAUaGugUuaCGG- -5'
30549 5' -50.1 NC_006548.1 + 18516 0.66 0.873688
Target:  5'- uCCGUCGUGGcCGCCggGUC-CA-UGUCg -3'
miRNA:   3'- -GGCGGUACUuGCGGa-UAGuGUuACGG- -5'
30549 5' -50.1 NC_006548.1 + 18668 0.67 0.865272
Target:  5'- aCCGCCGcaGGGCuGCCcaaggcguUGUCACug-GCCg -3'
miRNA:   3'- -GGCGGUa-CUUG-CGG--------AUAGUGuuaCGG- -5'
30549 5' -50.1 NC_006548.1 + 15685 0.67 0.856583
Target:  5'- aCGCCcaAUGucGACGCCUGcgaACAGUcgGCCg -3'
miRNA:   3'- gGCGG--UAC--UUGCGGAUag-UGUUA--CGG- -5'
30549 5' -50.1 NC_006548.1 + 3614 0.67 0.84763
Target:  5'- uCUGCCAgccaGAGCgagagccguGCCUGaCGCAacugGUGCCg -3'
miRNA:   3'- -GGCGGUa---CUUG---------CGGAUaGUGU----UACGG- -5'
30549 5' -50.1 NC_006548.1 + 23048 0.67 0.84763
Target:  5'- cCCGUCAUGAuccagacgcucGCGCUg--CACGAUGa- -3'
miRNA:   3'- -GGCGGUACU-----------UGCGGauaGUGUUACgg -5'
30549 5' -50.1 NC_006548.1 + 6235 0.67 0.84763
Target:  5'- cUCGaCCGUGGGCGCCUugAUCAguUggUccGCCc -3'
miRNA:   3'- -GGC-GGUACUUGCGGA--UAGU--GuuA--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.