miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3055 3' -58.4 NC_001493.1 + 75570 0.66 0.807669
Target:  5'- uCgACACGG-CCGCGcACaCCCGGGg-- -3'
miRNA:   3'- uGgUGUGUCaGGUGC-UG-GGGCCCaug -5'
3055 3' -58.4 NC_001493.1 + 110430 0.66 0.807669
Target:  5'- cGCCACACAucgCgGCGAgcaCCUCGGGUc- -3'
miRNA:   3'- -UGGUGUGUca-GgUGCU---GGGGCCCAug -5'
3055 3' -58.4 NC_001493.1 + 118386 0.66 0.807669
Target:  5'- gACUugGCGa-CCgAUGACCCCGGGUc- -3'
miRNA:   3'- -UGGugUGUcaGG-UGCUGGGGCCCAug -5'
3055 3' -58.4 NC_001493.1 + 2832 0.66 0.807669
Target:  5'- gACUugGCGa-CCgAUGACCCCGGGUc- -3'
miRNA:   3'- -UGGugUGUcaGG-UGCUGGGGCCCAug -5'
3055 3' -58.4 NC_001493.1 + 133613 0.66 0.798857
Target:  5'- cCCGgGCGGUCgGgGG-CCUGGGUGCc -3'
miRNA:   3'- uGGUgUGUCAGgUgCUgGGGCCCAUG- -5'
3055 3' -58.4 NC_001493.1 + 18058 0.66 0.798857
Target:  5'- cCCGgGCGGUCgGgGG-CCUGGGUGCc -3'
miRNA:   3'- uGGUgUGUCAGgUgCUgGGGCCCAUG- -5'
3055 3' -58.4 NC_001493.1 + 57612 0.66 0.798857
Target:  5'- gGCCaaugugACACGGUCUaccggcacgGCGACgaCGGGUGCc -3'
miRNA:   3'- -UGG------UGUGUCAGG---------UGCUGggGCCCAUG- -5'
3055 3' -58.4 NC_001493.1 + 54991 0.66 0.798857
Target:  5'- aGCCugGCGcugCCACGACCC--GGUAUg -3'
miRNA:   3'- -UGGugUGUca-GGUGCUGGGgcCCAUG- -5'
3055 3' -58.4 NC_001493.1 + 114743 0.66 0.788993
Target:  5'- aACCACACAccuccGUCCGCacgccauccgcuuGGcuugagcauucCCCUGGGUGCc -3'
miRNA:   3'- -UGGUGUGU-----CAGGUG-------------CU-----------GGGGCCCAUG- -5'
3055 3' -58.4 NC_001493.1 + 113571 0.66 0.780798
Target:  5'- cACCACAC--UCCAUcACCuCCGGGUu- -3'
miRNA:   3'- -UGGUGUGucAGGUGcUGG-GGCCCAug -5'
3055 3' -58.4 NC_001493.1 + 8604 0.66 0.780798
Target:  5'- cGCaCAUGCAGUCgACggggggGugCCCGGGUccACa -3'
miRNA:   3'- -UG-GUGUGUCAGgUG------CugGGGCCCA--UG- -5'
3055 3' -58.4 NC_001493.1 + 124159 0.66 0.780798
Target:  5'- cGCaCAUGCAGUCgACggggggGugCCCGGGUccACa -3'
miRNA:   3'- -UG-GUGUGUCAGgUG------CugGGGCCCA--UG- -5'
3055 3' -58.4 NC_001493.1 + 36881 0.66 0.780798
Target:  5'- -gCugGCGGUCCGCc-CCgCCGGuGUGCg -3'
miRNA:   3'- ugGugUGUCAGGUGcuGG-GGCC-CAUG- -5'
3055 3' -58.4 NC_001493.1 + 57553 0.66 0.780798
Target:  5'- uCCGCACGGU-CACGGCCUCGuGcACg -3'
miRNA:   3'- uGGUGUGUCAgGUGCUGGGGCcCaUG- -5'
3055 3' -58.4 NC_001493.1 + 12885 0.66 0.771568
Target:  5'- -aCGCACucgcUCCACcagcuguuGACCCCGGGgACg -3'
miRNA:   3'- ugGUGUGuc--AGGUG--------CUGGGGCCCaUG- -5'
3055 3' -58.4 NC_001493.1 + 128439 0.66 0.771568
Target:  5'- -aCGCACucgcUCCACcagcuguuGACCCCGGGgACg -3'
miRNA:   3'- ugGUGUGuc--AGGUG--------CUGGGGCCCaUG- -5'
3055 3' -58.4 NC_001493.1 + 63315 0.67 0.752752
Target:  5'- cACCACGguGUCgGuCGAUCCCGcGGg-- -3'
miRNA:   3'- -UGGUGUguCAGgU-GCUGGGGC-CCaug -5'
3055 3' -58.4 NC_001493.1 + 112065 0.67 0.743183
Target:  5'- uCCACGCGGcucucaUCCGauCGAUCCaCGGGUGg -3'
miRNA:   3'- uGGUGUGUC------AGGU--GCUGGG-GCCCAUg -5'
3055 3' -58.4 NC_001493.1 + 114540 0.67 0.743183
Target:  5'- uUCAgAUGGUCCGCGGCaCCCaGGGg-- -3'
miRNA:   3'- uGGUgUGUCAGGUGCUG-GGG-CCCaug -5'
3055 3' -58.4 NC_001493.1 + 41942 0.67 0.743183
Target:  5'- aGCCGgGCgAGUCCACGGCgCCGcacuuggaGGUGg -3'
miRNA:   3'- -UGGUgUG-UCAGGUGCUGgGGC--------CCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.