miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3055 5' -56.3 NC_001493.1 + 92934 0.66 0.912436
Target:  5'- aCGAuagUGAUCGGGGCCcUGggucgaaACgGUGUCu -3'
miRNA:   3'- -GCU---ACUAGCCCCGGcACa------UG-CGCAGc -5'
3055 5' -56.3 NC_001493.1 + 91474 0.66 0.906449
Target:  5'- gCGAUuc-CGGGGUauggGUAUGCGUCGa -3'
miRNA:   3'- -GCUAcuaGCCCCGgca-CAUGCGCAGC- -5'
3055 5' -56.3 NC_001493.1 + 112029 0.66 0.893788
Target:  5'- gCGAUGAUCGGucuGCCGUGg--GC-UCGg -3'
miRNA:   3'- -GCUACUAGCCc--CGGCACaugCGcAGC- -5'
3055 5' -56.3 NC_001493.1 + 107498 0.66 0.88712
Target:  5'- uCGGUGAUCucauccuGGGUCGUc-GCGCGUCu -3'
miRNA:   3'- -GCUACUAGc------CCCGGCAcaUGCGCAGc -5'
3055 5' -56.3 NC_001493.1 + 95489 0.66 0.88712
Target:  5'- ---cGAUCGGGGagGUG-ACGgGUCGu -3'
miRNA:   3'- gcuaCUAGCCCCggCACaUGCgCAGC- -5'
3055 5' -56.3 NC_001493.1 + 24464 0.66 0.880231
Target:  5'- uCGGUGGacgaaacCGGGGUgGUGUACcGCGUa- -3'
miRNA:   3'- -GCUACUa------GCCCCGgCACAUG-CGCAgc -5'
3055 5' -56.3 NC_001493.1 + 29137 0.67 0.873126
Target:  5'- --uUGGUCcGGGCCGUGccccCGCGuUCGg -3'
miRNA:   3'- gcuACUAGcCCCGGCACau--GCGC-AGC- -5'
3055 5' -56.3 NC_001493.1 + 113324 0.67 0.873126
Target:  5'- aCGggGAUCGu-GCCGgGUcuGCGCGUCGa -3'
miRNA:   3'- -GCuaCUAGCccCGGCaCA--UGCGCAGC- -5'
3055 5' -56.3 NC_001493.1 + 91343 0.67 0.850565
Target:  5'- ----cGUCGGGGCCuugaugaccGUGUccaGCGCGUCc -3'
miRNA:   3'- gcuacUAGCCCCGG---------CACA---UGCGCAGc -5'
3055 5' -56.3 NC_001493.1 + 85546 0.68 0.834545
Target:  5'- uCGGUGAUUGgaaGGGCCGUGccGCGCa--- -3'
miRNA:   3'- -GCUACUAGC---CCCGGCACa-UGCGcagc -5'
3055 5' -56.3 NC_001493.1 + 43888 0.68 0.826261
Target:  5'- gCGAcGGUCugaGGGGCCGUcaccagGUGCGCuUCGc -3'
miRNA:   3'- -GCUaCUAG---CCCCGGCA------CAUGCGcAGC- -5'
3055 5' -56.3 NC_001493.1 + 108933 0.68 0.808312
Target:  5'- -cGUGAUCGGaGCCGcgcccgcUGUcCGCGUCGu -3'
miRNA:   3'- gcUACUAGCCcCGGC-------ACAuGCGCAGC- -5'
3055 5' -56.3 NC_001493.1 + 91495 0.68 0.791475
Target:  5'- -cGUGAcaUGGGGCCG-GUGCGgGUCu -3'
miRNA:   3'- gcUACUa-GCCCCGGCaCAUGCgCAGc -5'
3055 5' -56.3 NC_001493.1 + 34215 0.69 0.744898
Target:  5'- uGGUGAUgGaGGGCCGcgGUGCcggccGCGUUGa -3'
miRNA:   3'- gCUACUAgC-CCCGGCa-CAUG-----CGCAGC- -5'
3055 5' -56.3 NC_001493.1 + 109810 0.69 0.735257
Target:  5'- aCGAUac-CGGGuGCggucuguggCGUGUACGCGUCGa -3'
miRNA:   3'- -GCUAcuaGCCC-CG---------GCACAUGCGCAGC- -5'
3055 5' -56.3 NC_001493.1 + 17765 0.69 0.735257
Target:  5'- cCGG-GGUCGGGGCCGca-ACGCGggCGu -3'
miRNA:   3'- -GCUaCUAGCCCCGGCacaUGCGCa-GC- -5'
3055 5' -56.3 NC_001493.1 + 133319 0.69 0.735257
Target:  5'- cCGG-GGUCGGGGCCGca-ACGCGggCGu -3'
miRNA:   3'- -GCUaCUAGCCCCGGCacaUGCGCa-GC- -5'
3055 5' -56.3 NC_001493.1 + 96248 0.71 0.635474
Target:  5'- gGAUGaAUCGGGGCCGUa-GCGCccgCGg -3'
miRNA:   3'- gCUAC-UAGCCCCGGCAcaUGCGca-GC- -5'
3055 5' -56.3 NC_001493.1 + 7621 0.72 0.584959
Target:  5'- gGGUGAU-GGGGCuCGUGUGCGUccgcggcauacgGUCGc -3'
miRNA:   3'- gCUACUAgCCCCG-GCACAUGCG------------CAGC- -5'
3055 5' -56.3 NC_001493.1 + 123176 0.72 0.584959
Target:  5'- gGGUGAU-GGGGCuCGUGUGCGUccgcggcauacgGUCGc -3'
miRNA:   3'- gCUACUAgCCCCG-GCACAUGCG------------CAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.