miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30550 3' -55.8 NC_006548.1 + 5528 0.66 0.59042
Target:  5'- cGGUCGAccuGaGCCCGGCG--GCGUcGCUCa -3'
miRNA:   3'- cCUAGUU---C-CGGGUCGCacUGCA-CGAG- -5'
30550 3' -55.8 NC_006548.1 + 36565 0.66 0.585932
Target:  5'- aGGUCAAGGUCaaccccuuggacaAGCGUGACGcugacGCUg -3'
miRNA:   3'- cCUAGUUCCGGg------------UCGCACUGCa----CGAg -5'
30550 3' -55.8 NC_006548.1 + 1970 0.66 0.579214
Target:  5'- gGGAUC-GGGCaCCAGgcCGUGGCucgGCUUa -3'
miRNA:   3'- -CCUAGuUCCG-GGUC--GCACUGca-CGAG- -5'
30550 3' -55.8 NC_006548.1 + 26537 0.66 0.56694
Target:  5'- cGAUCAuagcgccggAGGCaguccugCCAGC-UGAgGUGCUCg -3'
miRNA:   3'- cCUAGU---------UCCG-------GGUCGcACUgCACGAG- -5'
30550 3' -55.8 NC_006548.1 + 15918 0.66 0.556948
Target:  5'- gGGGUgAAGGUCaCAGCcucGACacgGUGCUCg -3'
miRNA:   3'- -CCUAgUUCCGG-GUCGca-CUG---CACGAG- -5'
30550 3' -55.8 NC_006548.1 + 3727 0.66 0.545906
Target:  5'- aGGUCGcauAGGCUuuGCGUGGCGccauUGUUCa -3'
miRNA:   3'- cCUAGU---UCCGGguCGCACUGC----ACGAG- -5'
30550 3' -55.8 NC_006548.1 + 23663 0.67 0.513236
Target:  5'- uGAUCGAGcGCUU-GCGUGAUcaggucaagGUGCUCa -3'
miRNA:   3'- cCUAGUUC-CGGGuCGCACUG---------CACGAG- -5'
30550 3' -55.8 NC_006548.1 + 6654 0.67 0.513236
Target:  5'- uGAUCGAGGCCaugcaagAGCGUGGUGgagccgacaUGCUCc -3'
miRNA:   3'- cCUAGUUCCGGg------UCGCACUGC---------ACGAG- -5'
30550 3' -55.8 NC_006548.1 + 24434 0.67 0.506796
Target:  5'- aGGGUCAAggccggcacguuuccGGCCCAGaccGGCcUGCUCa -3'
miRNA:   3'- -CCUAGUU---------------CCGGGUCgcaCUGcACGAG- -5'
30550 3' -55.8 NC_006548.1 + 32209 0.67 0.502522
Target:  5'- aGGUCGAGgcgcuggccgaGCCCAGgGUGAUGUccugGUUCa -3'
miRNA:   3'- cCUAGUUC-----------CGGGUCgCACUGCA----CGAG- -5'
30550 3' -55.8 NC_006548.1 + 5443 0.68 0.449535
Target:  5'- cGGAUCAccgaauaccugauGGGCCaUGGCGcgcaguuugaUGACGUGCg- -3'
miRNA:   3'- -CCUAGU-------------UCCGG-GUCGC----------ACUGCACGag -5'
30550 3' -55.8 NC_006548.1 + 24880 0.68 0.440505
Target:  5'- aGGAUguAGcGCuCCGGCG-GugGUGCg- -3'
miRNA:   3'- -CCUAguUC-CG-GGUCGCaCugCACGag -5'
30550 3' -55.8 NC_006548.1 + 28502 0.69 0.401662
Target:  5'- aGAUCcagcaauGGCaggaCCAGCGUGACGcaguccUGCUCg -3'
miRNA:   3'- cCUAGuu-----CCG----GGUCGCACUGC------ACGAG- -5'
30550 3' -55.8 NC_006548.1 + 27422 1.12 0.000295
Target:  5'- aGGAUCAAGGCCCAGCGUGACGUGCUCa -3'
miRNA:   3'- -CCUAGUUCCGGGUCGCACUGCACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.