miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30550 5' -56.7 NC_006548.1 + 16268 0.66 0.577879
Target:  5'- -aGUGGCGAcGGCCGcGacaucaCUCGACCCu -3'
miRNA:   3'- ccCAUUGCU-CCGGUuCcg----GAGCUGGG- -5'
30550 5' -56.7 NC_006548.1 + 8539 0.66 0.566942
Target:  5'- cGGGccuuucgaaUGGCGAagucGCCAAGGCCcuaggCGaaGCCCg -3'
miRNA:   3'- -CCC---------AUUGCUc---CGGUUCCGGa----GC--UGGG- -5'
30550 5' -56.7 NC_006548.1 + 23011 0.66 0.566942
Target:  5'- cGGUccuUGAGGCCGGcGGCCcagUCcACCCc -3'
miRNA:   3'- cCCAuu-GCUCCGGUU-CCGG---AGcUGGG- -5'
30550 5' -56.7 NC_006548.1 + 29209 0.66 0.556059
Target:  5'- aGG-AGCu-GGCCAAGGCaacuggCGAUCCg -3'
miRNA:   3'- cCCaUUGcuCCGGUUCCGga----GCUGGG- -5'
30550 5' -56.7 NC_006548.1 + 36570 0.66 0.556059
Target:  5'- ---cGACGAGGUCAAGGUCa--ACCCc -3'
miRNA:   3'- cccaUUGCUCCGGUUCCGGagcUGGG- -5'
30550 5' -56.7 NC_006548.1 + 15918 0.66 0.556059
Target:  5'- gGGGUGA--AGGUCAcaGCCUCGACa- -3'
miRNA:   3'- -CCCAUUgcUCCGGUucCGGAGCUGgg -5'
30550 5' -56.7 NC_006548.1 + 5646 0.66 0.548477
Target:  5'- uGGGUcuucuugAGCcAGGCCAucgaguccgugguccAGGCUUC-ACCCa -3'
miRNA:   3'- -CCCA-------UUGcUCCGGU---------------UCCGGAGcUGGG- -5'
30550 5' -56.7 NC_006548.1 + 27868 0.66 0.544159
Target:  5'- cGGGUgaggugcagcgcaGugGuGGCCGAGGCgaCG-CCUu -3'
miRNA:   3'- -CCCA-------------UugCuCCGGUUCCGgaGCuGGG- -5'
30550 5' -56.7 NC_006548.1 + 37945 0.66 0.534484
Target:  5'- cGGUGAgGuAGGCCGu-GCC-CGAUCCu -3'
miRNA:   3'- cCCAUUgC-UCCGGUucCGGaGCUGGG- -5'
30550 5' -56.7 NC_006548.1 + 2556 0.66 0.534484
Target:  5'- gGGGUuccaacccgAACGAGGCCGAGaucgcGCUgCGucauGCCCc -3'
miRNA:   3'- -CCCA---------UUGCUCCGGUUC-----CGGaGC----UGGG- -5'
30550 5' -56.7 NC_006548.1 + 12112 0.67 0.513213
Target:  5'- cGGUuucuucuCGucGGCCAAGGCCgaugaGAUCCc -3'
miRNA:   3'- cCCAuu-----GCu-CCGGUUCCGGag---CUGGG- -5'
30550 5' -56.7 NC_006548.1 + 17256 0.67 0.513213
Target:  5'- cGGUcagccAACGggccGGGCCGAGGUUgaaCGACUCg -3'
miRNA:   3'- cCCA-----UUGC----UCCGGUUCCGGa--GCUGGG- -5'
30550 5' -56.7 NC_006548.1 + 24319 0.68 0.461688
Target:  5'- uGGcGGCGGuGGCCGcguccuGGGUUUCGACCg -3'
miRNA:   3'- cCCaUUGCU-CCGGU------UCCGGAGCUGGg -5'
30550 5' -56.7 NC_006548.1 + 22943 0.68 0.451709
Target:  5'- gGGGUGGacuGGCCGccGGCCUCaagGACCg -3'
miRNA:   3'- -CCCAUUgcuCCGGUu-CCGGAG---CUGGg -5'
30550 5' -56.7 NC_006548.1 + 26682 0.68 0.451709
Target:  5'- gGGGUGGuCGuucAGGCUGAugauGGCCUUG-CCCu -3'
miRNA:   3'- -CCCAUU-GC---UCCGGUU----CCGGAGCuGGG- -5'
30550 5' -56.7 NC_006548.1 + 4025 0.68 0.422502
Target:  5'- uGGGUGAUGAcGGUCAuuGGUCUUGcUCCu -3'
miRNA:   3'- -CCCAUUGCU-CCGGUu-CCGGAGCuGGG- -5'
30550 5' -56.7 NC_006548.1 + 32718 0.68 0.422502
Target:  5'- aGGGgcGCGAGcGCguGcuCCUCGACCUc -3'
miRNA:   3'- -CCCauUGCUC-CGguUccGGAGCUGGG- -5'
30550 5' -56.7 NC_006548.1 + 23590 0.68 0.422502
Target:  5'- --cUGGCGGGGUCAgcGGGUCaucCGGCCCg -3'
miRNA:   3'- cccAUUGCUCCGGU--UCCGGa--GCUGGG- -5'
30550 5' -56.7 NC_006548.1 + 24363 0.68 0.413021
Target:  5'- cGGU--CuGGGCCGGaaacgugccGGCCUUGACCCu -3'
miRNA:   3'- cCCAuuGcUCCGGUU---------CCGGAGCUGGG- -5'
30550 5' -56.7 NC_006548.1 + 32149 0.68 0.413021
Target:  5'- ---gGGCucGGCCAGcGCCUCGACCUu -3'
miRNA:   3'- cccaUUGcuCCGGUUcCGGAGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.