miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30551 3' -52.7 NC_006548.1 + 29134 0.66 0.760283
Target:  5'- aCUCGACuCCuGCCGAGaCUGcUCaCCGa -3'
miRNA:   3'- -GAGUUGuGGuCGGUUCgGAUaAG-GGC- -5'
30551 3' -52.7 NC_006548.1 + 2363 0.66 0.760283
Target:  5'- ---cGCACCcGCCAGGCCggcgguUUUCCa -3'
miRNA:   3'- gaguUGUGGuCGGUUCGGau----AAGGGc -5'
30551 3' -52.7 NC_006548.1 + 33962 0.66 0.749431
Target:  5'- gUCGGCACUGGCCuGGCCggucaugCgCCGu -3'
miRNA:   3'- gAGUUGUGGUCGGuUCGGauaa---G-GGC- -5'
30551 3' -52.7 NC_006548.1 + 16850 0.66 0.738446
Target:  5'- --gAACACCGGCCAguacagccaaugGGCCagg-CCCa -3'
miRNA:   3'- gagUUGUGGUCGGU------------UCGGauaaGGGc -5'
30551 3' -52.7 NC_006548.1 + 20226 0.66 0.738446
Target:  5'- cCUCggUGCCGuGCCGccGGCCaucaaaggcAUUCCCGa -3'
miRNA:   3'- -GAGuuGUGGU-CGGU--UCGGa--------UAAGGGC- -5'
30551 3' -52.7 NC_006548.1 + 8702 0.66 0.727343
Target:  5'- ---cGCugCGGgCGGGCCUGgagUCCCu -3'
miRNA:   3'- gaguUGugGUCgGUUCGGAUa--AGGGc -5'
30551 3' -52.7 NC_006548.1 + 29075 0.66 0.727343
Target:  5'- -gCAGC-UCAGCCuuGGCCUucucgAUUCCCa -3'
miRNA:   3'- gaGUUGuGGUCGGu-UCGGA-----UAAGGGc -5'
30551 3' -52.7 NC_006548.1 + 38059 0.66 0.727343
Target:  5'- aUCAaaACGCUuaGGCCAGGCgCgcaaUCCCGa -3'
miRNA:   3'- gAGU--UGUGG--UCGGUUCG-Gaua-AGGGC- -5'
30551 3' -52.7 NC_006548.1 + 20785 0.66 0.716134
Target:  5'- gUCAAgGCCGGCC--GCCUGcUgCCGc -3'
miRNA:   3'- gAGUUgUGGUCGGuuCGGAUaAgGGC- -5'
30551 3' -52.7 NC_006548.1 + 22737 0.66 0.704833
Target:  5'- gCUCGAuCGCCAGCguGGCggcgUCCUGg -3'
miRNA:   3'- -GAGUU-GUGGUCGguUCGgauaAGGGC- -5'
30551 3' -52.7 NC_006548.1 + 35495 0.67 0.693454
Target:  5'- uUCAccugguCGCCGGCCAGGCUgaucacugcuUUCUCGg -3'
miRNA:   3'- gAGUu-----GUGGUCGGUUCGGau--------AAGGGC- -5'
30551 3' -52.7 NC_006548.1 + 1883 0.67 0.678565
Target:  5'- uUCAcgucACACCcccugaguaagccgAGCCAcGGCCUGgugCCCGa -3'
miRNA:   3'- gAGU----UGUGG--------------UCGGU-UCGGAUaa-GGGC- -5'
30551 3' -52.7 NC_006548.1 + 29832 0.67 0.670512
Target:  5'- -gCAAC-CCAGCCGGGCaugacCCCGc -3'
miRNA:   3'- gaGUUGuGGUCGGUUCGgauaaGGGC- -5'
30551 3' -52.7 NC_006548.1 + 14413 0.67 0.647409
Target:  5'- -cCAGCACCgaggcGGCCAAGCUgauccgugCCCa -3'
miRNA:   3'- gaGUUGUGG-----UCGGUUCGGauaa----GGGc -5'
30551 3' -52.7 NC_006548.1 + 32399 0.67 0.647409
Target:  5'- aUCAGCcugGCCGGCC-AGCCg--UCgCCGc -3'
miRNA:   3'- gAGUUG---UGGUCGGuUCGGauaAG-GGC- -5'
30551 3' -52.7 NC_006548.1 + 32207 0.69 0.564371
Target:  5'- gUCGagGCGCUGGCCGAGCCcagggugaugUCCUGg -3'
miRNA:   3'- gAGU--UGUGGUCGGUUCGGaua-------AGGGC- -5'
30551 3' -52.7 NC_006548.1 + 8397 0.69 0.543959
Target:  5'- uCUCuACGCuCGGCCAGGCCgg--CCuCGa -3'
miRNA:   3'- -GAGuUGUG-GUCGGUUCGGauaaGG-GC- -5'
30551 3' -52.7 NC_006548.1 + 29693 0.69 0.532722
Target:  5'- -gCGGCACCAGCaccugCGAGCCcAUUCgCGg -3'
miRNA:   3'- gaGUUGUGGUCG-----GUUCGGaUAAGgGC- -5'
30551 3' -52.7 NC_006548.1 + 32976 0.69 0.532722
Target:  5'- -gCGGCGCUGGCC-GGCCggcUCCCGc -3'
miRNA:   3'- gaGUUGUGGUCGGuUCGGauaAGGGC- -5'
30551 3' -52.7 NC_006548.1 + 25765 0.7 0.499548
Target:  5'- -cCAGC-CCAGCCAAGgCCc--UCCCGc -3'
miRNA:   3'- gaGUUGuGGUCGGUUC-GGauaAGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.