miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30552 3' -53.9 NC_006548.1 + 30944 0.66 0.693521
Target:  5'- gACCCGC---GAAACCGAgGGUcgCCg -3'
miRNA:   3'- gUGGGCGgucCUUUGGUUaCCGuaGG- -5'
30552 3' -53.9 NC_006548.1 + 25640 0.66 0.693521
Target:  5'- gCAUUCGCCGGGGgagaggAAgCAAagcGGCAUCUg -3'
miRNA:   3'- -GUGGGCGGUCCU------UUgGUUa--CCGUAGG- -5'
30552 3' -53.9 NC_006548.1 + 16902 0.66 0.693521
Target:  5'- cCACCC-CCgAGGAcaaGGCCAAgcuacUGGCggCCc -3'
miRNA:   3'- -GUGGGcGG-UCCU---UUGGUU-----ACCGuaGG- -5'
30552 3' -53.9 NC_006548.1 + 13316 0.66 0.693521
Target:  5'- uGCCCGCCgcAGGAGcgcgcGCCGAUuccgccGGCGcUCa -3'
miRNA:   3'- gUGGGCGG--UCCUU-----UGGUUA------CCGU-AGg -5'
30552 3' -53.9 NC_006548.1 + 25926 0.66 0.693521
Target:  5'- gGCCCGCgCGGGccagcAGgCGGUGaCAUCCg -3'
miRNA:   3'- gUGGGCG-GUCCu----UUgGUUACcGUAGG- -5'
30552 3' -53.9 NC_006548.1 + 17278 0.66 0.68675
Target:  5'- uGCgCGCCGGGGAaguuccacucggucaGCCAAcgGGCcgggCCg -3'
miRNA:   3'- gUGgGCGGUCCUU---------------UGGUUa-CCGua--GG- -5'
30552 3' -53.9 NC_006548.1 + 28119 0.66 0.682225
Target:  5'- cCGCCUGCUgugAGGcuGGACCAuaGGCcUCCu -3'
miRNA:   3'- -GUGGGCGG---UCC--UUUGGUuaCCGuAGG- -5'
30552 3' -53.9 NC_006548.1 + 31335 0.66 0.682225
Target:  5'- uGCCCGCCAucuGGAACUGAUuGGCc-CCg -3'
miRNA:   3'- gUGGGCGGUc--CUUUGGUUA-CCGuaGG- -5'
30552 3' -53.9 NC_006548.1 + 20855 0.66 0.670878
Target:  5'- aCACCCcCCuGGAGuucGCCGAgGGCGacggCCa -3'
miRNA:   3'- -GUGGGcGGuCCUU---UGGUUaCCGUa---GG- -5'
30552 3' -53.9 NC_006548.1 + 20533 0.66 0.659491
Target:  5'- uCugCCGCCGcugcGGAAgaGCCGcagGGCA-CCg -3'
miRNA:   3'- -GugGGCGGU----CCUU--UGGUua-CCGUaGG- -5'
30552 3' -53.9 NC_006548.1 + 676 0.66 0.659491
Target:  5'- aACgCCGCCAGGAuugccgugAGCUGAucUGGCuUCUu -3'
miRNA:   3'- gUG-GGCGGUCCU--------UUGGUU--ACCGuAGG- -5'
30552 3' -53.9 NC_006548.1 + 17945 0.66 0.648077
Target:  5'- aACuCCGCCAGGGucauGCCGucacggAUGGCcugAUCg -3'
miRNA:   3'- gUG-GGCGGUCCUu---UGGU------UACCG---UAGg -5'
30552 3' -53.9 NC_006548.1 + 34190 0.66 0.648077
Target:  5'- --aCUGCCGGGuAGACCGAgaaccguacGGCGUaCCg -3'
miRNA:   3'- gugGGCGGUCC-UUUGGUUa--------CCGUA-GG- -5'
30552 3' -53.9 NC_006548.1 + 11321 0.66 0.644649
Target:  5'- gACUCGUCuuaacaucaacugaGGcGAAGCCGcugGUGGCAUCUg -3'
miRNA:   3'- gUGGGCGG--------------UC-CUUUGGU---UACCGUAGG- -5'
30552 3' -53.9 NC_006548.1 + 20238 0.67 0.636648
Target:  5'- uGCCCGgaaCCGGGuuGCC--UGGUgaGUCCg -3'
miRNA:   3'- gUGGGC---GGUCCuuUGGuuACCG--UAGG- -5'
30552 3' -53.9 NC_006548.1 + 9968 0.67 0.629787
Target:  5'- aACCCGCaacaucuuugcauuaCAGGAGccACCGccAUGGCcgCUg -3'
miRNA:   3'- gUGGGCG---------------GUCCUU--UGGU--UACCGuaGG- -5'
30552 3' -53.9 NC_006548.1 + 4239 0.67 0.625213
Target:  5'- gGCCUuGCgCAGGgcGCgGGUGGCGUUg -3'
miRNA:   3'- gUGGG-CG-GUCCuuUGgUUACCGUAGg -5'
30552 3' -53.9 NC_006548.1 + 8339 0.67 0.625213
Target:  5'- --aCCGCCGGGucGCUGccGGC-UCCa -3'
miRNA:   3'- gugGGCGGUCCuuUGGUuaCCGuAGG- -5'
30552 3' -53.9 NC_006548.1 + 1086 0.67 0.613786
Target:  5'- gCACUCGCUAGGggGCUgcucaGCAagaUCCa -3'
miRNA:   3'- -GUGGGCGGUCCuuUGGuuac-CGU---AGG- -5'
30552 3' -53.9 NC_006548.1 + 13066 0.68 0.579647
Target:  5'- uCACCC-UCGGcGcgGCCGGUGGCGUaCCc -3'
miRNA:   3'- -GUGGGcGGUC-CuuUGGUUACCGUA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.